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胡萝卜14-3-3基因家族的鉴定与分析

Identification and Analysis of 14-3-3 Gene Family in Daucus carota

  • 摘要: 以胡萝卜为试材,采用分子生物学和生物信息学方法对胡萝卜14-3-3基因家族各成员进行鉴定,研究分析其理化特性、基因结构、保守结构域、复制事件、系统进化及顺式作用元件,以期为进一步研究胡萝卜14-3-3蛋白的功能提供参考依据。结果表明:胡萝卜中共鉴定到11个14-3-3基因,不均匀分布在6条染色体上,含有3~7个外显子,其中1对基因发生片段复制事件;编码的蛋白序列长度为236~264 aa,分子量为26.64~30.14 kD,等电点为4.65~5.33,具有7个Motif,全部为酸性非分泌型蛋白,定位在细胞核。系统进化分析显示,胡萝卜14-3-3蛋白分为ε类(3个)与非ε(8个)类2个亚族。此外,顺式作用元件分析结果表明,胡萝卜14-3-3基因含有大量激素与逆境胁迫相关元件。

     

    Abstract: Taking carrot as the test material, 14-3-3 gene family in carrot were identified and their physicochemical properties, gene structure, conserved domains, replication events, phylogenetic evolution and cis-acting elements were analyzed, in order to provide reference for further understanding the function of 14-3-3 proteins in carrot.The results showed that a total of 11 14-3-3 genes were identified in carrot, unevenly distributed on six chromosomes, containing 3 to 7 exons, and one pair of 14-3-3 genes underwent segmental duplication.Carrot 14-3-3 proteins contained 236-264 amino acid residues, with molecular weight of 26.64-30.14 kD,isoelectric point of 5.84-9.14,and 7 conserved motifs.All 14-3-3 proteins of carrot were acidic and non-secreted proteins and located in the nucleus.Phylogenetic analysis indicated that the 14-3-3 proteins of carrot were divided into ε-type(3 members) and non ε-type(8 members).In addition, cis-acting element analysis showed that carrot 14-3-3 genes contained a large number of hormone-and stress-related elements.

     

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