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大豆OPR基因家族全基因组鉴定与表达分析

Genome-wide Identification and Expression Analysis of Soybean OPR Gene Family

  • 摘要: 为了揭示大豆12-氧-植物二烯酸还原酶(12-oxo-phytodienoic acid reductase, OPR)家族成员GmOPRs在大豆生长发育中和非生物胁迫下发挥的作用,本研究运用生物信息学方法进行大豆OPR基因家族全基因组鉴定及表达分析。结果显示:大豆基因组中共有12个OPR家族基因成员,分布在8条不同染色体上。系统发育进化分析、基因结构分析和保守基序分析结果显示,GmOPRs可分为两个亚组,含有外显子4~5个,内含子3~5个,GmOPR蛋白之间保守基序分布相似。共线性分析鉴定表明共有4对基因存在共线关系,均为片段复制。GmOPRs启动子区域含有响应厌氧、干旱和低温等非生物胁迫以及JA、ABA等多种激素的顺式作用元件。不同的大豆品种及不同的组织中,GmOPRs的表达模式有差异。GmOPR1、GmOPR4和GmOPR9受干旱胁迫影响后表达量下降,GmOPR7、GmOPR8、GmOPR11和GmOPR12随着盐胁迫影响时间的增长表达量增加,表明GmOPRs基因通过多种表达模式响应干旱和盐胁迫。GmOPRs在系统发育进化和基因结构上比较保守,基因家族数量的扩增主要归因于片段重复。GmOPRs受干旱、盐胁迫等非生物胁迫的影响,表现出不同的表达模式,表明GmOPR基因家族可能在响应非生物胁迫中发挥重要作用。

     

    Abstract: In order to reveal the role of GmOPRs, a member of soybean 12-oxo-phytodienoic acid reductase(OPR) family in soybean growth and development under abiotic stress, we identified and analyzed the whole genome of soybean OPR gene family with bioinformatics method. The results showed that there were twelve OPR genes distributed on 8 chromosomes in soybean genome. The phylogenetic analysis, gene structure analysis and conserved motifs analysis showed that GmOPRs could be divided into two subgroups, containing 4-5 exons and 3-5 introns respectively. The conserved motifs of GmOPR proteins were similar in distribution. Colinear analysis identified colinear relationship among four pairs of genes, all of which were fragment replication. The promoter region of GmOPRs contained cis-acting elements responding to abiotic stress such as anaerobic, drought and low temperature, JA, ABA and other hormones. The expression patterns of GmOPRs were different in different soybean varieties and tissues. The expression of GmOPR1, GmOPR4 and GmOPR9 decreased under drought stress, while the expression of GmOPR7, GmOPR8, GmOPR11 and GmOPR12 increased over time under salt stress, suggesting that the GmOPRs responded to drought and salt stress through multiple expression patterns. GmOPRs were conserved in phylogenetic evolution and gene structure, and the amplification of the gene families was mainly attributed to fragment repetition. GmOPRs were affected by abiotic stresses such as drought and salt stress, and showed different expression patterns. The results suggest that GmOPR gene family may play an important role in abiotic stress responding.

     

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