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当归春化作用相关SOSEKI基因的鉴定及表达分析

Identification and expression analysis of the vernalizationrelated SOSEKI gene in Angelica sinensis

  • 摘要: 【目的】探明当归(Angelica sinensis)春化作用相关SOSEKI (SOK)基因的生物学功能,分析其对春化作用和冷冻温度的表达响应。【方法】基于当归种苗春化作用(0℃)和冷冻贮藏(-3℃)后的全长转录组测序,挖掘春化作用基因FLOWERING LOCUS C (FLC),利用在线生物信息学工具分析其生物学功能,并对表达模式进行qRT-PCR验证。【结果】从当归全长转录组中挖掘到一个含1 005个碱基的AsSOK基因,包括FLC及其侧翼基因UPSTREAM OF FLC (UFC)和DOWNSTREAM OF FLC (DFC),亚细胞定位于细胞核;保守基序和系统进化树分析显示,该基因编码的蛋白质含有4个保守基序(motif-2、-4、-5和-6),与黄胡萝卜(Daucus carota subsp.Sativus)中的LOC Dc108213152关系最近,具有相似的结构和位置。基因表达检测发现,AsSOK基因在种苗春化作用过程中表达量显著下降,而在冷冻贮藏过程中显著增加。【结论】第一次挖掘到并全面分析了当归春化作用相关基因AsSOK的生物学功能,为利用基因编辑AsSOK调控当归抽薹开花等研究提了供理论基础。

     

    Abstract: 【Objective】 To study the biological function of the vernalization-related SOSEKI(SOK)gene in Angelica sinensis and to analyze its expression pattern in response to vernalization and freezing temperatures.【Method】 The vernalization-related FLC gene was found out based on the full-length transcriptome sequencing of A. sinensis seedlings stored at vernalization(0 ℃) and freezing(-3 ℃) temperatures,its biological function was analyzed using the online bioinformatics tools, and gene expression was validated by qRT-PCR.【Result】 A three-gene cluster AsSOK of 1 005 bases was identified in A. sinensis,consisting of FLC and its two flanking genes UPSTREAM OF FLC(UFC) and DOWNSTREAM OF FLC(DFC),and localized subcellularly in nucleus. Conserved motif and phylogenetic analysis showed that the AsSOK protein contained four motifs(motif-2,-4,-5, and-6) and had the closest relationship with LOC Dc108213152 of Daucus carota subsp. sativus with similar motif composition and position. Gene expression analysis showed that the expression level of AsSOK gene significantly decreased during vernalization,while it increased at freezing temperatures.【Conclusion】 This study is the first time to unravel and comprehensively analyze the biological function of vernalization-related AsSOK gene cluster, which will provide fundamental basis for regulating the bolting and flowering of A. sinensis by gene AsSOK editing technique.

     

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