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绵羊皮肤不同发育时期miR-802-5p生物信息学分析

Bioinformatics analysis of miR-802-5p in sheep skin at different developmental stages

  • 摘要: 为了探索miR-802-5p在绵羊毛囊生长发育过程中的作用,试验采用高通量测序技术获得绵羊miR-802-5p序列,分析该序列的保守性,结合生物信息学分析方法对miRNA的靶基因进行预测,并对获得的靶基因集合进行GO及KEGG pathway富集分析。结果表明:miR-802-5p在脱毛与不脱毛两个群体中的表达量呈相反趋势,且在毛囊休止期时差异最大。miR-802-5p共靶向到994个靶基因,其中FGF5、APC、SMAD4、GSK3β等均为毛囊发育相关基因或毛囊发育相关通路Wnt中的重要影响因子。说明靶基因分别在毛囊发育等生物学过程中发挥作用,参与合成PcG蛋白复合物、线粒体膜等细胞组分,并涉及Wnt信号通路的负调控等分子功能;miR-802-5p可能是影响毛囊生长阶段的候选miRNA。

     

    Abstract: In order to explore the role of miR-802-5 p in the growth and development of sheep hair follicles, miR-802-5 p in sheep was obtained through high-throughput sequencing technology in the experiment, and its sequence conservation was analyzed. Target genes of miRNA were predicted by bioinformatics analysis methods, and GO analysis and KEGG pathway enrichment analysis was conducted for the acquired target gene set. The results showed that the expression level of miR-802-5 p in the two populations with and without hair removal showed an opposite trend, and the difference was the largest during the telogen phase of the hair follicle. A total of 994 target genes were obtained, among which FGF5, APC, SMAD4, and GSK3β were all genes related to hair follicle development or important influencing factors in Wnt related to hair follicle development. Target genes have shown that they play a role in the development of hair follicles and other biological processes, participate in the synthesis of PcG protein complexes, mitochondrial membranes and other cellular components, and involve the negative regulation of Wnt signaling pathways. The results indicated that miR-802-5 p may be a candidate miRNA affecting the growth stage of hair follicles.

     

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