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广东地区猪A型塞内卡病毒USA/GBI29/2015-like株的分离鉴定与进化分析

Isolation, identification and evolutionary analysis of USA/GBI29/2015-like Senecavirus A in Guangdong area

  • 摘要: 为了了解广东地区猪A型塞内卡病毒(SVA)的遗传变异情况,试验采用病毒分离纯化、间接免疫荧光、增殖动态、电子显微镜观察等方法确定疑似病料感染情况,同时采用序列比对分析方法与GenBank中具有代表性的(SVA)全基因组序列进行同源性分析,利用MEGA6.0软件构建全基因组系统发育进化树。结果表明:分离的病毒能够和SVA多克隆抗体发生特异性反应,病毒粒子呈球形,直径25~30 nm,成功分离得到一株SVA毒株,命名为CH-GDZQ-1;CH-GDZQ-1毒株在感染PK15细胞第15小时时病毒效价达到峰值,为1×108.78 TCID50/mL;CH-GDZQ-1全基因组序列与USA/GBI29/2015株核苷酸相似性为98.1%,高度同源,该毒株与中国毒株CH-GDLZ01-2017(MG428680)、CH-GDLZ02-2017(MG428681)、CH-GDQC-2017(MG428682)、CH-GDYD-2017(MG428683)、CH-GDYS01-2017(MG428684)和CH-GDYS02-2017(MG428685)在同一个进化分支,同时与美国毒株USA/GBI29/2015(KT827251)处于同一个大的分支。说明成功分离一株USA/GBI29/2015-like毒株,该毒株具有较高的病毒效价,且在广东地区流行。

     

    Abstract: In order to understand the genetic variation of porcine Senecavirus(SVA) A in Guangdong area, the experiment employed virus isolation and purification, indirect immunofluorescence, proliferation kinetics, electron microscope observation and other methods for the determination of the infection of suspected disease materials. At the same time, the sequence alignment analysis method was used to analyze the homology with the representative whole genome sequences(SVA) in GenBank, and the MEGA6.0 software was used to construct the whole genome phylogenetic tree. The results showed that the isolated virus could react specifically with the SVA polyclonal antibody, and the virus particles were spherical with a diameter of 25-30 nm. A SVA strain was successfully isolated and named as CH-GDZQ-1. The virus titer of CH-GDZQ-1 strain reached the peak at the 15th hour of infection of PK15 cells, which was 1×108.78 TCID50/mL. The whole genome sequence of CH-GDZQ-1 had 98.1% nucleotide similarity with USA/GBI29/2015 strain, which had a high degree of homology. The strain was in the same evolutionary branch with the Chinese strains CH-GDLZ01-2017(MG428680), CH-GDLZ02-2017(MG428681), CH-GDQC-2017(MG428682), CH-GDYD-2017(MG428683), CH-GDYS01-2017(MG428684) and CH-GDYS02-2017(MG428685), and was also in the same branch with the American strain USA/GBI29/2015(KT827251). The results suggested that a USA/GBI29/2015-like strain was successfully isolated, which had a high virus titer, and the USA/GBI29/2015-like strain was prevalent in Guangdong area.

     

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