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红螯螯虾卵黄蛋白原N端结构域的生物信息学分析与蛋白的表达鉴定

Bioinformatics analysis and protein expression identification of vitellogenin N-terminal domain in Cherax quadricarinatus

  • 摘要: 为研究红螯螯虾(Cherax quadricarinatus)卵黄蛋白原N端结构域(vitellogenin N domain, VitN)的生物学功能并获得具有免疫特异性的红螯螯虾VitN融合蛋白,试验根据红螯螯虾卵黄蛋白原的mRNA序列(GenBank登录号为AF306784.1)获得VitN mRNA序列(编码第42~585位氨基酸),通过在线分析工具对红螯螯虾VitN进行生物信息学分析,并优化合成红螯螯虾VitN基因序列,构建重组表达质粒pET-28a-VitN,将其转化至大肠杆菌BL21(λDE3)感受态细胞中,经IPTG诱导,对红螯螯虾VitN融合蛋白进行表达、纯化、包涵体复性、Western-blot鉴定和浓度测定。结果表明:编码红螯螯虾VitN的氨基酸共544个,均为常见氨基酸,其中丙氨酸、缬氨酸和丝氨酸含量较多(占比分别为7.72%、7.72%和7.54%),色氨酸含量最少(仅占0.92%);红螯螯虾VitN的相对分子质量为64 681,理论等电点为8.69,共含有8 540个原子,分子式为C2671H4260N758O818S33,不稳定系数为31.49,脂肪系数为74.56,亲水性平均值为-0.45,亲水氨基酸数量明显多于疏水氨基酸数量;编码红螯螯虾VitN的氨基酸全部位于细胞膜外,不存在跨膜区;红螯螯虾VitN亚细胞定位在细胞外或细胞质内,不含常规信号肽,也不含Ⅰ型信号肽酶;红螯螯虾VitN共有67个磷酸化位点,其中丝氨酸磷酸化位点31个,苏氨酸磷酸化位点23个,酪氨酸磷酸化位点13个;红螯螯虾VitN的二级结构包括α-螺旋、β折叠、延伸链、无规则卷曲;三级结构包含具有脂质结合功能的lv-1n和lv-1c肽链结构,且呈现上下两个较为明显的区域,上半部分为sheet折叠结构富集区域,下半部分为α螺旋结构富集区域;在红螯螯虾第129~153位氨基酸和第396~402位氨基酸处各存在一个二硫键。优化后的红螯螯虾VitN基因片段大小约为1 650 bp;经连接、转化、诱导,获得了大小约为64.7 ku的融合蛋白,其在大肠杆菌BL21(λDE3)感受态细胞中的主要表达形式为包涵体;最佳诱导条件为37℃、250 r/min振荡培养至菌液的OD600值达到0.6时,加入诱导剂IPTG至终浓度为0.5 mmol/L,继续于37℃、250 r/min振荡培养4 h;包涵体用Ni-NTA柱纯化时以50 mmol/L咪唑洗脱液的洗脱效果为最佳;经Western-blot鉴定进一步确定该蛋白为目的蛋白;纯化的红螯螯虾VitN融合蛋白的最终浓度为0.45 mg/mL。说明初步对红螯螯虾VitN进行了生物信息学分析,并成功构建了重组表达质粒pET-28a-VitN,优化了表达系统及纯化方案,获得了具有免疫特异性的红螯螯虾VitN融合蛋白。

     

    Abstract: To study the biological functions of vitellogenin N domain(VitN) in Cherax quadricarinatus,and obtain VitN fusion protein with immune specificity, VitN mRNA sequence(coding 42-585 aa) was obtained according to the mRNA sequence of vitellogenin of Cherax quadricarinatus(GenBank accession number AF306784.1). Bioinformatics analysis of VitN was carried out by online analysis tools. VitN gene sequence was optimized and synthesized to construct recombinant expression plasmid pET-28 a-VitN. The fusion protein was transformed into Escherichia coli BL21(λDE3) cells and induced by IPTG. The expression, purification, inclusion body renaturation, Western-blot identification and concentration determination of VitN fusion protein were performed. The results showed that there were 544 amino acids encoding VitN, all of which were common amino acids, among which alanine, valine and serine were the most, accounting for 7.72%, 7.72% and 7.54%, respectively. Tryptophan content was the least, accounting for only 0.92%. The relative molecular weight of VitN was 64 681; the theoretical isoelectric point was 8.69, a total of 8 540 atoms; the molecular formula was C2671H4260N758O818S33, the instability coefficient was 31.49; the fat coefficient was 74.56, and the average hydrophilic value was-0.45. The number of hydrophilic amino acids was significantly higher than that of hydrophobic amino acids. The amino acids encoding VitN were all located outside the cell membrane without transmembrane region. VitN subcellular localization was extracellular or cytoplasmic examination. It did not contain conventional signal peptides, nor did it contain type Ⅰ signal peptidase. There were 67 phosphorylation sites in VitN, including 31 serine phosphorylation sites, 23 threonine phosphorylation sites, and 13 tyrosine phosphorylation sites. The secondary structure of VitN consisted of α-helixes, β folds, extended chains, and random curls. VitN contained lipid-binding lv-1 n and lv-1 c peptide chains. There were two obvious regions in the upper and lower parts of the tertiary structure. The upper part was enriched with sheet folding structure, and the lower part was enriched with α helix structure. There were two disulfide bonds at amino acids 129-153 and 396-402 respectively. The optimized VitN gene fragment size was about 1 650 bp. The fusion protein with a size of 64.7 ku was obtained by ligating, transforming and inducing. The main expression form of the fusion protein was inclusion body in E. coli BL21(λDE3) competent cells. When the OD600 value reached 0.6, inducer IPTG was added at 250 r/min at 37 ℃ for 4 h and the final concentration was 0.5 mmol/L. When the inclusion body was purified by Ni-NTA column, the elution effect of 50 mmol/L Imidazole eluent was the best. The protein was further identified as the target protein by Western-blot. The final concentration of purified VitN fusion protein was 0.45 mg/mL. It indicated that bioinformatics analysis VitN in Cherax quadricarinatus was carried out; the recombinant expression plasmid pET-28 a-VitN was successfully constructed; the expression system and purification scheme were optimized, and the VitN fusion protein with immune specificity was obtained.

     

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