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PRRSV、基因2型CSFV、PRV和JEV一步法多重RT-PCR检测方法的建立

One-step multiplex RT-PCR detection method for PRRSV, genotype 2 CSFV, PRV and JEV

  • 摘要: 为了建立一种快速鉴别PRRSV、基因2型CSFV、PRV和JEV的一步法多重RT-PCR检测方法,试验分别以PRRSV ORF6基因、基因2型CSFV E2基因、PRV gE基因和JEV E基因为靶基因构建重组核酸标准品;设计4对特异性检测引物,在同一反应体系中对One-step RT-PCR Enzyme Mix浓度、引物浓度和退火温度等进行优化,检验特异性、敏感性和重复性;用建立的一步法多重RT-PCR检测方法与商品化试剂盒同时对已知临床样本35份PRRSV、45份CSFV、20份PRV (gE)和25份JEV阳性核酸和20份阴性核酸样本进行检测,比较符合率。结果表明:经反应条件的优化确定一步法多重RT-PCR检测方法的最佳扩增体系5×QIANGEN One-step RT-PCR Buffer 10μL,dNTP Mix 2μL,One-step RT-PCR Enzyme Mix(20 U/μL)2μL,上下游引物(基因2型CSFV、JEV引物浓度均为5μmol/L,PRRSV引物浓度为3μmol/L,PRV引物浓度为7μmol/L)各1μL,模板1μL,DEPC水补足至50μL和扩增程序50℃30 min; 95℃15 min; 94℃30 s, 58℃30~45 s(基因2型CSFV、PRRSV 30 s, PRV、JEV 45 s),72℃1 min,共循环35次;72℃10 min。该方法对基因1型CSFV毒株(Shimen株)、CSFV疫苗株(HCLV株)、PRV疫苗株、BVDV及9种猪常见病毒和细菌病原均未检出;对PRRSV、基因2型CSFV、PRV和JEV核酸标准品检测下限分别为1.72×102 copies/μL、1.97×10~3 copies/μL、1.94×103 copies/μL和2.08×102 copies/μL;该方法具有良好的重复性;与商品化试剂盒检测结果的符合率分别为PRRSV 100%(k=1)、基因2型CSFV 96.9%(k=0.93)、PRV 100%(k=1)和JEV 100%(k=1)。说明本研究建立了一种能同时检测PRRSV、基因2型CSFV、PRV (gE基因)和JEV的快速、精准和高效的一步法多重RT-PCR检测方法,该方法具有良好的特异性、敏感性和重复性。

     

    Abstract: In order to establish a one-step multiplex RT-PCR detection method for rapid identification of PRRSV, genotype 2 CSFV, PRV and JEV, the experiment used PRRSV ORF6 gene, genotype 2 CSFV E2 gene, PRV gE gene and JEV E gene as target genes to construct recombinant nucleic acid standards. Four pairs of specific detection primers were designed, and the One-step RT-PCR Enzyme Mix concentration, primer concentration and annealing temperature in the same reaction system were optimized to test specificity, sensitivity and repeatability. The known clinical samples(35 PRRSV, 45 CSFV, 20 PRV(gE) and 25 JEV positive nucleic acid and 20 negative nucleic acid samples) were detected and the compliance rate was compared. The results showed that the optimal amplification system of one-step multiplex RT-PCR was determined by optimizing the reaction conditions: 5×QIANGEN One-step RT-PCR Buffer 10 μL, dNTP Mix 2 μL, One-step RT-PCR Enzyme Mix(20 U/μL) 2 μL, upstream and downstream primers(genotype 2 CSFV and JEV primer concentration of 5 μmol/L, PRRSV primer concentration of 3 μmol/L, PRV primer concentration of 7 μmol/L) each 1 μL, template 1 μL, DEPC water was made up to 50 μL. Amplification program was 50 ℃ for 30 min, 95 ℃ for 15 min, 94 ℃ for 30 s, 58 ℃ for 30-45 s(genotype 2 CSFV, PRRSV 30 s, PRV, JEV 45 s), 72 ℃ for 1 min, a total of 35 cycles; 72 ℃ for 10 min. Genotype 1 CSFV strain(Shimen strain), CSFV vaccine strain(HCLV strain), PRV vaccine strain, BVDV and 9 common swine viruses and bacterial pathogens were not detected by this method. The detection limits of PRRSV, genotype 2 CSFV, PRV and JEV nucleic acid standards were 1.72×10~2 copies/μL, 1.97×10~3 copies/μL, 1.94×10~3 copies/μL and 2.08×10~2 copies/μL, respectively; the method had good repeatability; the coincidence rates with the detection results of commercial kits were PRRSV 100%(k=1), genotype 2 CSFV 96.9%(k=0.93), PRV 100%(k=1) and JEV 100%(k=1). The results suggested that this study established a rapid, accurate and efficient one-step multiplex RT-PCR detection method that could simultaneously detect PRRSV, genotype 2 CSFV, PRV(gE gene) and JEV, and had good specificity, sensitivity and repeatability.

     

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