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大额牛瘤胃细菌CDT-1蛋白的生物信息学特征研究

Bioinformatics characterization of rumen bacteria CDT-1 protein of Bas frontalis

  • 摘要: 为了研究从云南大额牛(Bas frontalis)瘤胃微生物宏基因组文库中发掘出的纤维糊精酶-1(CDT-1)蛋白的生物信息学特征,试验使用ProtParam、TMHMM Server 2.0、ProtScale、NCBI Conserved Domains、SignalP 5.0、TargetP 2.0、PSORTⅡserver、SOPMA、SWISS-MODEL、NetN Glyc 1.0 Server、NetP hos 3.1 Server、NCBI protein BLASTp和MEGA 7.0等在线分析工具和软件,分析CDT-1蛋白的基本理化性质、跨膜区、亲水性/疏水性、结构域、信号肽、亚细胞定位、二级结构、三级结构、N端糖基化位点和丝氨酸、苏氨酸和酪氨酸的磷酸化位点及系统进化情况等生物信息学特征。结果表明:CDT-1蛋白的相对分子质量为38 082.24,理论等电点为4.80,带负电荷的残基总数为45个,带正电荷的残基总数为29个,估计半衰期为30 h,属于亲水型稳定的脂蛋白,定位于细胞壁和细胞外,含有1个由α-螺旋、无规则卷曲、扩展链和β-转角组成的保守结构域,三级结构同源建模有较高的可信度,有2个N端糖基化位点和26个磷酸化位点,可能具有较高的酶活力;CDT-1蛋白与系统进化树中的内切葡聚糖酶的纤维素酶蛋白高度同源。说明CDT-1蛋白是来源于内切葡聚糖酶中的纤维素酶蛋白的亲水型稳定脂蛋白。

     

    Abstract: In order to study the bioinformatics characteristics of cellodextrinase-1(CDT-1) protein excavated from Rumen Microbial Metagenomic Library of Yunnan Gayal(Bos frontalis), ProtParam, TMHMM Server 2.0, ProtScale, NCBI Conserved Domains, SignalP 5.0, TargetP 2.0, PSORT Ⅱ server, SOPMA, SWISS-MODEL, NetN Glyc 1.0 Server, NetP hos 3.1 Server, NCBI protein BLASTp and MEGA 7.0 and other online analysis tools and software were used to analyze the basic physical and chemical properties, transmembrane region, hydrophilicity/hydrophobicity, protein domain, signal peptide, subcellular localization, secondary structure, tertiary structure, N-terminal glycosylation site, protein serine, threonine and tyrosine phosphorylation sites and system evolution of CDT-1 protein. The results showed that the relative molecular mass of CDT-1 protein was 38 082.24; the theoretical isoelectric point was 4.80; the total number of negatively charged residues was 45; the total number of positively charged residues was 29; and the estimated half-life was 30 h; and the water-type stable lipoprotein was located in extracellular with cell wall and contained a conserved domain composed of α-helix, random coils, extended strands, and β-turns. The tertiary structure homology modeling had a high degree of credibility. It had two N-terminal glycosylation sites and 26 phosphorylation sites, which might have high enzyme activity. CDT-1 protein was highly homologous to the cellulase protein of endoglucanase in the phylogenetic tree. It indicated that the CDT-1 protein was a hydrophilic stable lipoprotein derived from cellulase protein in endoglucanase.

     

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