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PRRSV类NADC30毒株免提取核酸荧光定量RT-PCR检测方法的建立

Establishment of a nucleic acid extraction-free fluorescence RT-PCR detection method for PRRSV NADC30-like strain

  • 摘要: 为了建立简便、快速检测猪繁殖与呼吸综合征病毒(PRRSV)类NADC30毒株免提取核酸荧光定量RT-PCR方法,试验根据GenBank中PRRSV类NADC30毒株NSP2基因设计引物和探针,建立了直接对样品中PRRSV类NADC30毒株检测的荧光定量RT-PCR方法。对该方法的敏感性、特异性和重复性进行评估,并对临床样本进行检测。结果表明:建立的PRRSV类NADC30毒株免提取核酸荧光定量RT-PCR方法的扩增体系(20μL)为2×PrimeDirect Probe RT-qPCR Mix 10μL,PRRSV类NADC30毒株液1μL,NADC30-F(15μmol/μL)0.8μL,NADC30-R(15μmol/μL)0.8μL,NADC30-P(15μmol/μL)0.4μL,灭菌纯化水7μL。扩增程序为90℃3 min; 60℃5 min; 95℃5 s, 54℃20 s (收集荧光信号,选择FAM通道),40个循环。该法特异性好,对其他猪常见病原无交叉反应。对PRRSV类NADC30毒株液的最低检测限度为3.98 TCID50/100μL,与传统提取核酸的荧光定量RT-PCR检测方法敏感性一致。不同病毒含量样本组内和组间变异系数均不高于2%,具有良好的重复性和稳定性。临床样本检测结果与传统荧光定量RT-PCR方法检测结果一致。说明建立的PRRSV类NADC30毒株免提取核酸荧光定量RT-PCR检测方法特异性好、敏感性高,具有良好的重复性和稳定性,可用于PRRSV类NADC30毒株的临床检测。

     

    Abstract: In order to establish a simple and rapid detection method of nucleic acid extraction-free fluorescence quantitative RT-PCR for Porcine reproductive and respiratory syndrome virus NADC30-like strain, the primers and probes were designed according to the NSP2 gene of the PRRSV NADC30-like strain in GenBank. A fluorescent quantitative RT-PCR method for direct detection of PRRSV NADC30-like strain in samples was established. The sensitivity, specificity, and reproducibility of the method were evaluated and tested on clinical samples. The results showed that the amplification system(20 μL) of nucleic acid extraction-free fluorescence quantitative RT-PCR method for the PRRSV NADC30-like strain was: 2×PrimeDirect Probe RT-qPCR Mix 10 μL, PRRSV NADC30-like strain solution 1 μL, NADC30-F(15 μmol/μL) 0.8 μL, NADC30-R(15 μmol/μL) 0.8 μL, NADC30-P(15 μmol/μL) 0.4 μL, sterilized purified water 7 μL. The amplification program was as follows: 90 ℃ for 3 min; 60 ℃ for 5 min; 95 ℃ for 5 s, 54 ℃ for 20 s(the fluorescence signal was collected and the FAM channel was selected), 40 cycles. The method had good specificity and no cross-reaction to other common swine pathogens. The minimum detection limit for PRRSV NADC30-like strain solution was 3.98 TCID50/100 μL, which was consistent with the sensitivity of the traditional fluorescent RT-PCR detection method for nucleic acid extraction. The intra-group and inter-group variation coefficients of samples with different virus contents were not more than 2%, with good repeatability and stability. The detection results of clinical samples were consistent with the detection results of traditional fluorescent quantitative RT-PCR method. The results indicated that the established PRRSV NADC30-like strain nucleic acid extraction-free fluorescence quantitative RT-PCR detection method had good specificity, high sensitivity, good repeatability and stability, and could be used for clinical detection of PRRSV NADC30-like strain.

     

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