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广西地区牛库布病毒RT-PCR检测及其遗传进化分析

RT-PCR detection and genetic evolution analysis of bovine Kobuvirus in Guangxi region

  • 摘要: 为了了解广西地区奶牛、肉牛的牛库布病毒(bovine Kobuvirus, BKV)感染情况及分子特征,试验采用RT-PCR的方法对从广西地区采集的奶牛粪便177份、肉牛粪便27份(共204份粪便,其中腹泻牛粪便82份,健康牛粪便122份)进行BKV和其他肠道病毒的检测,分析BKV与其他肠道病毒的共感染情况,以及不同地点和不同季节BKV的感染情况,同时对广西地区BKV的3D基因与国内外30株库布病毒的3D基因进行核苷酸序列同源性分析和遗传进化分析。结果表明:广西地区BKV的感染率为2.94%(6/204),均从腹泻牛粪便中检出,其中奶牛和肉牛的感染率分别为2.26%(4/177)、7.41%(2/27),将6株毒株分别命名为BKV-GXGG01(贵港株)、BKV-GXHC01(河池株)、BKV-GXHC02(河池株)、BKV-GXNN01(南宁株)、BKV-GXNN02(南宁株)和BKV-GXNN03(南宁株);BKV与牛病毒性腹泻病毒、牛肠道病毒和牛星状病毒存在混合感染,感染率为66.67%(4/6),而单一感染率为33.33%(2/6);6株广西地区BKV毒株的3D基因间的核苷酸序列同源性为93.5%~100%,与国内外Aichivirus B类型参考毒株间的核苷酸序列同源性为89.9%~95.1%,与其他库布病毒参考毒株的核苷酸同源性为35.9%~75.2%;6株广西地区毒株在遗传进化分析中均属于Aichivirus B类型,毒株BKV-GXNN01与日本株K-35、河南株B4、内蒙古株H6和H18、山东株C2、黑龙江株SC7-5、辽宁株H9同属一分支,其余5株毒株BKV-GXGG01、BKV-GXHC01、BKV-GXHC02、BKV-GXNN02、 BKV-GXNN03与北京株B1213、泰国株CMB02、日本株U-1同属一分支。说明在广西地区奶牛、肉牛的腹泻病例中均存在BKV感染,推测BKV可能与牛腹泻有关。

     

    Abstract: In order to understand the infection and molecular characteristics of bovine Kobuvirus(BKV) in dairy and beef cattle in Guangxi region, in this experiment, the RT-PCR method was used to detect BKV and other enteroviruses in 177 cow feces and 27 beef feces(a total of 204 feces, including 82 diarrheal feces and 122 normal feces) collected from Guangxi region. The co-infection of BKV with other enteroviruses, as well as the infection of BKV in different locations and seasons, was analyzed; and the nucleotide similarity and genetic evolution were analyzed according to the 3D sequences of BKV in Guangxi region and the 3D sequences of 30 Kobuviruses at home and abroad. The results showed that the infection rate of BKV in Guangxi region was 2.94%(6/204), all of which were detected in diarrheal feces; among them, the infection rates of dairy cows and beef cattle were 2.26%(4/177) and 7.41%(2/27), respectively. The sequences of the six strains were named BKV-GXGG01(Guigang strain), BKV-GXHC01(Hechi strain), BKV-GXHC02(Hechi strain), BKV-GXNN01(Nanning strain), BKV-GXNN02(Nanning strain) and BKV-GXNN03(Nanning strain). BKV had mixed infection with Bovine viral diarrhea virus, Bovine enterovirus and Bovine astrovirus, with an infection rate of 66.67%(4/6) and a single infection rate of 33.33%(2/6). The nucleotide similarity between the 3D sequences of the six BKV strains in Guangxi region was 93.5%-100%; the nucleotide similarity with the domestic and foreign Aichivirus B reference strains was 89.9%-95.1%, and the nucleotide similarity with other Kobuvirus reference strains was 35.9%-75.2%. The six strains in Guangxi region all belonged to Aichivirus B class in genetic evolution analysis, the strain BKV-GXNN01 belonged to the same branch as the Japanese strain K-35, Henan strain B4, Inner Mongolia strain H6 and H18, Shandong strain C2, Heilongjiang strain SC7-5, and Liaoning strain H9; and the remaining 5 strains BKV-GXGG01, BKV-GXHC01, BKV-GXHC02, BKV-GXNN02, BKV-GXNN03 belonged to the same branch as Beijing strain B1213, Thailand strain CMB02, and Japanese strain U-1. The results suggested that BKV was presented in diarrhea cases in dairy and beef cattle in Guangxi region, which was speculated that BKV might be related to bovine diarrhea.

     

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