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马鹿SCAI基因的克隆、生物信息学及组织表达分析

Cloning, bioinformantics and tissue expression analysis of SCAI gene in Cervus canadensis

  • 摘要: 为探究细胞侵袭抑制因子(suppressor of cancer cell invasion, SCAI)基因编码蛋白的生物学特性及基因mRNA在马鹿(Cervus canadensis)鹿茸组织中的表达水平,试验采用PCR方法克隆马鹿SCAI基因编码序列区(CDS区)全长序列,测序后进行核苷酸序列同源性比对并构建系统进化树;通过生物信息学方法分析SCAI蛋白的组成、结构和理化性质等;利用实时荧光定量PCR方法检测SCAI基因mRNA在鹿茸组织中的表达水平。结果表明:马鹿SCAI基因CDS全长1 821 bp,与白尾鹿亲缘关系较近;与鸡亲缘关系较远。SCAI基因编码606个氨基酸,相对分子质量为70 337.48。理论等电点为8.85,平均亲水性为-0.433,为亲水性蛋白。SCAI蛋白中存在57个潜在磷酸化位点,不存在信号肽,亚细胞主要定位于细胞核中,不属于分泌蛋白。SCAI蛋白的二级结构中α-螺旋和无规则卷曲占比最大,为不稳定蛋白。马鹿SCAI基因在茸皮层中的相对表达量最高,其次为软骨层,在间充质和前软骨层中相对表达量最低。说明SCAI基因参与了马鹿鹿茸的生长发育。

     

    Abstract: In order to explore the biological characteristics of SCAI coding protein and its mRNA expression level in Cervus canadensis antler tissues, the full-length CDS sequence of Cervus canadensis SCAI was cloned by PCR,the similarity alignment and phylogenetic tree construction were carried out after sequencing. The composition, structure and physicochemical properties SCAI protein were analyzed by bioinformatics method. The expression level of SCAI mRNA in antler tissue were detected by Real-time quantitative PCR. The results showed that the full length of the SCAI gene CDS region in Cervus canadensis was 1 821 bp, which had high similarity and close genetic relationship with white-tailed deer, and had low similarity and far genetic relationship with chicken. SCAI encoded 606 amino acids, and the relative molecular weight was 70 337.48. The theoretical isoelectric point was 8.85 and the average hydrophilic coefficien was-0.433, indicating that SCAI protein was a hydrophilic protein. There were 57 potential phosphorylation sites in SCAI proteins but no signal peptides. Subcells were mainly localized in the nucleus, so it was not secretory proteins. The structure of α helical and irregular coil was the most in the secondary structure, so SCAI was unstable protein. The expression levels of SCAI gene in skin of red deer antler was the highest, followed by cartilage, which was the lowest expression in mesenchyme and precartilage. These results indicated SCAI gene plays an important role in the growth and development of Cervus canadensis antler velvet.

     

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