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禽源PKR基因生物信息学及组织表达分析

Bioinformatics and tissue expression analysis of poultry-derived PKR gene

  • 摘要: 为了探讨禽源双链RNA依赖的蛋白质激酶(PKR)基因的分子生物学特征并了解其在鸡组织/器官中的表达分布情况,试验首先利用生物信息学在线工具对编码蛋白进行了理化性质分析及二级结构、三级结构预测;然后将禽源PKR基因插入至真核表达载体pEF1α-Myc中,将重组真核表达载体pEF1α-Myc-PKR转染至DF1细胞中,通过间接免疫荧光鉴定和Western-blot鉴定对表达的蛋白进行验证,通过激光共聚焦扫描显微镜对其进行亚细胞定位;最后采用实时荧光定量PCR检测该基因在SPF鸡不同组织/器官中的分布情况。结果表明:禽源PKR蛋白的分子式为C2744H4332N772O842S23,共编码550个氨基酸,理论分子质量为62 346.63 u,等电点(pI)为8.63,不稳定系数为45.54,属于不稳定蛋白;二级结构中,α-螺旋占比为33.27%,延伸链占比为13.64%,β-转角占比为4.73%,无规则卷曲占比为48.36%;三级结构预测模型与人类PKR蛋白的相似性为47.29%。经双酶切验证成功构建了重组真核表达载体pEF1α-Myc-PKR,该载体可在DF1细胞中表达PKR蛋白,蛋白质分子量约为62 ku,具有良好的反应原性,且主要定位于细胞质中。禽源PKR基因在SPF鸡的17个受检组织/器官中均有表达,但在不同组织/器官中的表达量不同;在血液中的表达量最高,然后依次为胰腺、肠、肺脏、脾脏、胸腺、法氏囊、肝脏、腺胃、肌胃、皮肤、气管、脑和肾脏;在关节和肌肉中的表达量极低。说明PKR基因可能参与血液免疫反应,在先天免疫反应中扮演重要角色。

     

    Abstract: In order to investigate the molecular biological characteristics of the poultry-derived double-stranded RNA-dependent protein kinase(PKR) gene and to understand its expression distribution in chicken tissues/organs, in this experiment, firstly, the physical and chemical properties of the coding protein were analyzed and the secondary structure and tertiary structure were predicted using the bioinformatics online tool. The poultry-derived PKR gene was then inserted into the pEF1α-Myc eukaryotic expression vector; the recombinant eukaryotic expression vector pEF1α-Myc-PKR was then transfected into DF1 cells. The expressed protein were verified by indirect immunofluorescence and Western-blot identification, and subcellular localization was performed by laser confocal scanning microscopy. Finally, real-time PCR was used to detect the distribution of the gene in different tissues/organs of SPF chicken. The results showed that the molecular formula of poultry-derived PKR protein was C2744H4332N772O842S23, and a total of 550 amino acids were encoded. The theoretical molecular mass was 62 346.63 u, the isoelectric point(pI) was 8.63, and the instability coefficient was 45.54, which was an unstable protein. Among the secondary structure, the proportion of α-helix was 33.27%, the proportion of extended chain was 13.64%, the proportion of β-corner was 4.73%, and the proportion of irregular curl was 48.36%. The similarity between the tertiary structure prediction model and human PKR protein was 47.29%. The recombinant eukaryotic expression vector pEF1α-Myc-PKR was successfully constructed by double digestion, and the recombinant eukaryotic expression vector pEF1α-Myc-PKR could express PKR protein in DF1 cells. The molecular mass of the protein was about 62 ku, which had good reactogenicity and was mainly localized in the cytoplasm. Poultry-derived PKR gene was expressed in all 17 tissues/organs of SPF chicken, but the expression was different in different tissues/organs. The highest expression was in the blood, followed by the pancreas, intestines, lung, spleen, thymus, bursa, liver, glandular stomach, muscle stomach, skin, trachea, brain and kidney; extremely low expression was in joints and muscles. The results speculated that this gene might be involved in blood immunity reaction, and played an important role in the innate immune response.

     

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