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中国家驴TYRP1基因第二内含子多态性分析

Analysis of polymorphisms in the second intron of TYRP1 gene of Chinese domestic donkeys

  • 摘要: 为了探究TYRP1基因对中国家驴毛色的影响,试验采集410只不同毛色中国家驴的血液样本,采用聚合酶链式反应及单链构象多态性(polymerase chain reaction and single-strand conformation polymorphism, PCR-SSCP)方法检测中国家驴TYRP1基因第二内含子中的单核苷酸多态性(single nucleotide polymorphism, SNP)位点,对不同毛色中国家驴个体进行基因分型,并计算基因型频率和等位基因频率,分析TYRP1基因第二内含子多态性与中国家驴不同毛色之间的关系。结果表明:在中国家驴TYRP1基因第二内含子中检测到1个SNP位点(g.1 702A→G),该位点存在AA、AG、GG三种基因型;乌头、黑三粉、青三粉、灰三粉、白色和白化家驴的优势等位基因均为A。乌头、黑三粉和青三粉均为AA基因型频率最高,GG基因型频率最低;灰三粉为AA基因型频率最高,AG基因型频率最低(0)。在乌头、黑三粉、青三粉、灰三粉家驴中,AA基因型频率为灰三粉最高,然后依次为青三粉、黑三粉和乌头;以黑毛色为主色调的家驴(乌头、黑三粉、青三粉)GG基因型频率低于以灰毛色为主色调的家驴(灰三粉),有白毛混杂的黑三粉和青三粉的GG基因型频率低于纯黑的乌头。样本中的白色家驴和白化家驴各有2头,其基因型均为AA纯合子。说明随着中国家驴黑色被毛比例的增加,TYRP1基因g.1 702A→G位点的AA基因型频率逐渐降低,推测该位点可能与中国家驴毛色性状有关。

     

    Abstract: In order to explore the effects of TYRP1 gene on the coat color of Chinese domestic donkeys, in the experiment, blood samples were collected from 410 Chinese donkeys with different coat colors, and polymerase chain reaction and single-stranded conformation polymorphism(PCR-SSCP) methods were used to detect single nucleotide polymorphism(SNP) sites in the second intron of the TYRP1 gene of Chinese donkeys. Individuals of Chinese donkeys with different coat colors were genotyped and genotype frequencies and allele frequencies were calculated; the relationship between polymorphisms in the second intron of the TYRP1 gene and different coat colors of Chinese national donkeys was analyzed. The results showed that one SNP locus(g.1 702A→G) was detected in the second intron of the TYRP1 gene of the Chinese domestic donkeys; this locus contained three genotypes, AA, AG and GG. The dominant allele was A in black, black three-pink, green three-pink, gray three-pink, white and albino domestic donkeys; black, black three-pink and green three-pink all had the highest frequency of the AA genotype and the lowest frequency of the GG genotype; gray three-pink had the highest frequency of the AA genotype and the lowest frequency of the AG genotype(0). Among the black, black three-pink, green three-pink and grey three-pink donkeys, the AA genotype frequency was the highest for gray three-pink, followed by green three-pink, black three-pink, and black in that order; the frequency of GG genotypes of domestic donkeys with predominantly black coat color(black, black three-pink, and green three-pink) was lower than that of donkeys with predominantly grey coat color(grey three-pink); black three-pink and green three-pink with a mixture of white hairs had a lower frequency of GG genotypes than that of purely black. There were two white domestic donkeys and two albino domestic donkeys each in the sample, all of which were genotyped as AA pure. The results indicated that the AA genotype frequency of g.1 702A →G of TYRP1 gene decreased with the increase of the proportion of black coat in Chinese domestic donkeys, suggesting that the AA genotype frequency of G1,702A→G in TyrP1 gene might be related to the hair color traits of Chinese domestic donkeys.

     

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