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双乾肉羊PDK4基因的组织表达差异及多态性分析

Analysis of tissue expression differences and polymorphism in PDK4 gene of Shuangqian sheep

  • 摘要: 为了研究丙酮酸脱氢酶激酶4(pyruvate dehydrogenase kinase 4,PDK4)基因在双乾肉羊不同组织中的表达差异,以及基因外显子多态性对肉质性状的影响,试验以45只健康的8月龄双乾肉羊公羊为研究对象,屠宰后采集心脏、肝脏、脾脏、肺脏、肾脏、十二指肠及背最长肌,利用PCR法与Sanger测序法结合的方式检测PDK4基因外显子中的单核苷酸多态性位点(SNP),并与肉质性状数据进行关联分析。结果表明:PDK4基因广泛分布于各组织中,在十二指肠组织中的相对表达量最高。PDK4基因第1外显子存在2个SNP位点,分别为Chr 4.14723148 T>C突变、Chr 4.14723208 T>C突变。Chr 4.14723148 T>C存在2种基因型,分别为CC和CT基因型;Chr 4.14723208 T>C存在3种基因型,分别是TT、TC和CC基因型。突变基因型分布符合哈代温伯格(Hardy-Weinberg)定律,突变个体在群体中处于稳定状态。Chr 4.14723148 T>C和Chr 4.14723208 T>C位点的多态性信息含量分别为0.94和0.61,均为高度多态(P>0.5),Chr 4.14723148 T>C突变中CC基因型为优势基因型,其个体压榨水分率显著低于CT基因型个体(P<0.05)。说明双乾肉羊群体稳定存在Chr 4.14723148突变位点,并且CC优势基因型个体肌肉水分保持能力更强,正向影响肉质性状。

     

    Abstract: To investigate the expression difference of pyruvate dehydrogenase kinase 4(PDK4) gene in different tissues of sheep and the effects of gene exons polymorphism on meat quality traits, 45 healthy 8-month-old Shuangqian rams were selected as the research subjects in the experiment. After slaughter, different tissues(heart, liver, spleen, lung, kidney, intestine, longissimus muscle) were collected. The single nucleotide polymorphism(SNP) in the exon of PDK4 gene was detected by a combination method of PCR and Sanger sequencing, and then associated with meat quality data. The results showed that the PDK4 gene was widely distributed in various tissues, and its relative expression was the highest in duodenum tissues. There were two SNP in the first exon of the PDK4 gene(T>C mutation at Chr 4. 14723148 and T>C mutation at Chr 4. 14723208). There were two genotypes at Chr 4. 14723148 position, which were CC and CT. There were three genotypes at Chr 4. 14723208 position, namely TT, TC, and CC. The distribution of mutated genotypes followed Hardy Weinberg’s law, indicating that the mutated individual was in a stable state in the population. The polymorphism information content was 0.94 and 0.61, respectively, both of which were highly polymorphic(P>0.5). The CC genotype at Chr 4. 14723148 locus was the dominant genotype, and its individual drip loss rate was significantly lower than that of the CT genotype(P<0.05). The experimental results indicated that the Chr4. 14723148 SNP locus was stable in the sheep population, and the dominant gene CC type had highly water holding capacity that affected meat quality traits.

     

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