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甘薯响应蔓割病病原菌(Fusarium oxysporum f. sp batatas)侵染的IbERF1基因序列与表达分析

Sequence and Expression Analysis of IbERF1 Gene Response to Fusarium oxysporum f.sp.batatas Infection in Ipomoea batatas

  • 摘要: 为了阐明甘薯(Ipomoea batatas)IbERF基因在生物胁迫中的作用,以高抗蔓割病(fusarium wilt)的品种‘鄂薯11’为供试材料,克隆到IbERF1基因,并对其进行生物信息学分析,同时对蔓割病病原菌(Fusarium oxysporum f. sp batatas)侵染、外施茉莉酸甲酯和乙烯利的基因表达模式进行了分析。生物信息学分析结果显示,IbERF1的CDS序列全长为588 bp,编码195个氨基酸;推测其编码不稳定的亲水性蛋白,蛋白分子质量为21.97 ku,等电点为5.11。IbERF1启动子区存在多种类型的启动子顺式作用元件,如植物激素应答元件Myb和胁迫响应元件MYC、MYB。多序列比对及系统进化树分析结果表明,IbERF1蛋白与日本牵牛花InERF1B-like的亲缘关系最近。亚细胞定位预测以及实验显示IbERF1蛋白定位于细胞核。蛋白二级结构预测显示,IbERF1蛋白含无规则卷曲结构27.69%,α-螺旋结构53.85%,延伸链结构12.31%,β-转角结构6.15%。实时荧光定量PCR分析结果显示,蔓割病病原菌侵染2 h和侵染4 h后,‘鄂薯11’的IbERF1表达量显著提高(P<0.05);茉莉酸甲酯和乙烯利各处理2,4和12 h,其表达量也显著提高。综上,IbERF1受蔓割病病原菌、茉莉酸甲酯以及乙烯利诱导表达。

     

    Abstract: To study the role of sweet potato IbERF in biotic stress, IbERF1 was cloned from high resistance Fusarium wilt variety ‘Eshu11’. Bioinformatics analysis and the expression levels of IbERF1 in Eshu11 were carried out under Fusarium oxysporum f.sp. batatas(Fob) infection, MeJA and ETH treatment. The result of bioinformatics analysis showed that the full length of IbERF1 CDS sequence was 588 bp, which encoded 195 amino acids. It was presumed that IbERF1 encoding an unstable hydrophilic protein, its molecular weight was 21.97 ku, the isoelectric point was 5.11. Different promoter cis-acting elements such as plant hormone response elements Myb, stress response element MYC, MYB, etc. were found in the promoter region of IbERF1. The multiple sequences alignment and phylogenetic tree analysis revealed that IbERF1 protein was closest to InERF1 B-like. The results of subcellular localization prediction and experiment showed that IbERF1 protein was a nucleus localized protein. The prediction of protein secondary structure revealed that IbERF1 protein contained 27.69% of random coil structure, 53.85% of α-helix structure, 12.31% of extended chain structure, and 6.15% of β-turn. The results of real-time quantitative PCR analysis indicated that the expression level of IbERF1 in ‘Eshu11’ significantly increased(P<0.05) at 2 hours and 4 hours under Fob infection, and the expression level of IbERF1 is significantly increased(P<0.05) at 2 h, 4 h, 12 h under MeJA and ETH treatment. To sum up, IbERF1 expression could be induced by Fob, MeJA and ETH treatment.

     

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