凡纳滨对虾(Litopenaeus vannamei)盐度调控相关基因CLCA1的克隆及表达分析
Cloning and Relative Expression Analysis of Salinity Regulation Gene CLCA1 in Litopenaeus vannamei
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摘要: 钙激活氯离子通道调节剂(calcium-activated chloride channel regulator, CLCA)为一类金属蛋白酶依赖家族,在哺乳动物上皮组织杯状细胞的粘液产生和粘液平衡中起重要作用。为了探究CLCA1基因在凡纳滨对虾渗透压中的作用机制,本研究采用RACE技术在凡纳滨对虾中克隆出了CLCA1基因,该基因总长度为3 129 bp,5'端非编码区长度为175 bp,3'端非编码区长度为107 bp,开放阅读框ORF长度为2 847 bp,共编码984个氨基酸,有1个跨膜区域,膜外有VMA结构域。与其他物种氨基酸序列比对结果显示,凡纳滨对虾CLCA1氨基酸与其他物种相似性都较低,相似度最高的为刀额新对虾(Procambarus clarkii) CLCA2氨基酸序列,为47.83%。RT-qPCR结果显示,CLCA1基因在凡纳滨对虾各组织中均有表达,其中肠道、肝胰腺和鳃中的表达量较高;对不同盐度下凡纳滨对虾4个组织中CLCA1基因的定量结果显示,随着盐度的下降,CLCA1基因的表达量在4个组织中呈下调趋势,表明CLCA1基因与凡纳滨对虾的渗透压调节相关。本研究初步阐明了CLCA1基因的理化性质,对CLCA1基因在凡纳滨对虾体内各组织和不同盐度下各组织的表达定量可为CLCA1基因在今后甲壳动物的渗透压调节及免疫调节的研究提供基础支持。Abstract: Calcium-activated chloride channel regulator(CLCA) is a metalloproteinase-dependent family protein and plays an essential role in goblet cell mucus production and balance from the epithelium in mammals. In order to figure out the osmotic pressure regulation of CLCA1 in Litopenaeus vannamei, we cloned full-length of CLCA1 cDNA by RACE technology. The total length of the gene was 3 129 bp, with the length of the 5’-terminal non-coding region of 175 bp, the length of the 3’-terminal non-coding region of 107 bp, and the ORF length of the open reading frame of 2 847 bp. It encoded 984 amino acids in total, with one transmembrane region, and a VMA structure domain outside the membrane. The results of amino acid sequence comparison with other species showed that the CLCA1 amino acid of Litopenaeus vannamei was not similar to the other species, the highest similarity was the CLCA2 amino acid sequence of Procambarus clarkii, which was 47.83%. RT-qPCR results showed that CLCA1 gene was expressed in all tissues of Litopenaeus vannamei, the expressions were higher in intestine, gill and hepatopancreas. Results showed the expression of CLCA1 gene was down-regulated in four tissues as salinity decreased which meant that CLCA1 was involved in osmotic pressure regulation of Litopenaeus vannamei. The experiment initially clarified the physical and chemical properties of CLCA1 gene and quantified CLCA1 gene expression in different tissues of litopenaeus vannamei under different salinity. These results provided basic support for future studies on the role of CLCA1 gene in osmotic pressure regulation in crustaceans.