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基于GEO数据库、TMT蛋白组学筛选绞股蓝对膀胱癌的蛋白靶点

Screening Protein Targets of Gynostemma pentaphyllum on Bladder Cancer Based on GEO Database and TMT Proteomics

  • 摘要: 绞股蓝(Gynostemma pentaphyllum)是传统的中药材,对于多种癌症具有显著的疗效。为筛选绞股蓝对膀胱癌的作用靶点,本研究将30只SPF级SD大鼠随机分为模型组、给药组和空白组,通过膀胱灌注N-甲基-N-亚硝基脲(MNU)建立膀胱癌模型并通过相同的方式进行膀胱灌注绞股蓝干预治疗,在第10周进行取材,通过H&E染色病理切片观察各组膀胱内肿瘤情况以明确药效。通过蛋白质组学串联质谱标签(TMT) 10重标记法检测各组膀胱组织的蛋白差异表达情况,结合GEO数据库中3组膀胱癌数据集对作用靶点进行筛选。结果显示,绞股蓝反向调节膀胱癌335种蛋白质,其中包括55种上调和280种下调。GEO的3个膀胱癌表达谱中汇集的差异蛋白(DEGs)包含20种上调和50种下调。将GEO中DEGs与TMT蛋白质组学中膀胱癌趋势相同的蛋白进行汇集,结合绞股蓝反向调节数据,总共筛选获得了3个反向调节靶点,其中包括1种下调的靶点CNN1和2种上调的靶点KRT19、PCP4,并通过蛋白免疫印迹法进行验证。本研究结果表明,CNN1、KRT19和PCP4可能是绞股蓝治疗膀胱癌的潜在靶点,绞股蓝可能通过调节CNN1、KRT19和PCP4来抵抗膀胱癌,这为绞股蓝治疗膀胱癌提供分子机制依据。

     

    Abstract: Gynostemma pentaphyllum(GYP) is a traditional Chinese medicinal material which has a significant effect on a variety of cancers. To screen the target of GYP on bladder cancer, this study used 30 SPF grade SD rats to construct model group, drug group and blank group, and then establish bladder cancer model by injecting N-methyl-N-nitrosourea(MNU) and used the same way to treat by GYP. All of the group were taken the tissue at the10 thweek, and the bladder tumors in each group were observed by H&E staining pathological sections. Proteomics tandem mass spectrometry(TMT) 10-fold labeling method was used to detect differentially expressed proteins in the bladder tissue of each group, and the targets were screened in combination with the three groups of bladder cancer data sets in the GEO database. The results showed that GYP reversely regulated 335 proteins, including 55 up-regulated and 280 down-regulated. GEO’s three differentially expressed proteins(DEGs) pooled in three bladder cancer expression profiles include 20 up-regulations and 50 down-regulations. By screening DEGs in GEO and proteins with the same bladder cancer trend in TMT proteomics, combined with GYP reverse regulation data, a total of three reverse regulation targets were obtained, including one down-regulated target CNN1 and two up-regulated targets KRT19 and PCP4, and then checked by Western blot. The results of the study indicate that CNN1,KRT19 and PCP4 may be potential targets for the treatment of bladder cancer by GYP, and GYP may resist bladder cancer by regulating CNN1, KRT19 and PCP4, which provided molecular basis for the treatment of bladder cancer by GYP.

     

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