牦牛MEF2C基因克隆、生物信息学及表达谱分析
Cloning Bioinformatics Analysis and Expression Profiling of Yak MEF2C Gene
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摘要: 本试验旨在分析牦牛(Bos grunniens)肌细胞增强因子2C (myocyte enhancer factor 2C, MEF2C)基因的分子特征和表达规律,探索其影响牦牛肌肉发育的作用机制。试验以大通牦牛肌肉组织cDNA为模板,采用PCR扩增技术扩增牦牛MEF2C基因,用DNAStar,ExPASy,ABCpred等生物信息学软件分析MEF2C基因序列和其编码的蛋白质结构,利用实时荧光定量PCR技术(RT-qPCR)检测了MEF2C基因的表达情况。试验克隆获得的牦牛MEF2C基因编码区全长1 302 bp,编码433个氨基酸;蛋白质结构预测结果显示,MEF2C蛋白具有30 h的半衰期,为亲水性碱性蛋白,没有信号肽但拥有跨膜结构。系统关系中牦牛与普通牛的亲缘关系最为接近,与小鼠亲缘关系较远。组织表达谱结果显示,MEF2C基因在牦牛7个组织中都有表达且在臀二头肌组织中表达量最高;不同时期MEF2C基因表达情况为胎牛>成年牛>6月龄牛。研究结果将为进一步探讨MEF2C基因在牦牛肌肉发育中的作用提供科学依据,同时也为解析牦牛肌肉发育的分子机制提供数据支撑。Abstract: The purpose of this experiment was to analyze the molecular characteristics and expression patterns of the myocyte enhancer factor 2 C(MEF2 C) gene of yak(Bos grunniens), and explore the mechanism of MEF2 C gene influencing yak muscle development. In the experiment, muscle tissue cDNA of Datong yak was used as a template and MEF2 C gene sequence was amplified throuth PCR amplification technology and its encoded protein structure were analyzed by using DNAStar, ExPASy, ABCpred, and other bioinformatics software. The expression of MEF2 C gene was detected by real-time fluorescence quantitative PCR(RT-qPCR) technology. The yak MEF2 C gene coding region obtained by cloning was 1 302 bp in length, encoding 433 amino acids. The protein structure prediction results showed that the MEF2 C protein with a half-life of 30 h, was a hydrophilic basic protein, having no signal peptide but has a transmembrane structure. In the system relationship, the yak was closest to the ordinary cattle, but farther away from the mouse. The results showed that MEF2 C gene was expressed in 7 tissues of yak, and the highest expression was found in muscle tissues, the MEF2 C gene expression in different periods was fetal yak> adult yak> 6 months old yak.The research results will provide a scientific basis for further exploring the role of MEF2 C gene in yak muscle development, and also provide data support for the analysis of the molecular mechanism of yak muscle development.