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牦牛RPLP1基因克隆、生物信息学分析及组织表达规律分析

Cloning, Bioinformatics and Tissue Expression Analysis of Yak RPLP1 gene

  • 摘要: 为研究牦牛酸性核糖体磷酸蛋白P1 (RPLP1)基因结构与功能以及其在各个组织间的表达规律,本研究采用同源克隆和RT-PCR方法扩增牦牛RPLP1基因并获得全长序列,并对牦牛RPLP1的蛋白质结构和氨基酸序列进行生物信息学分析,然后提取青海大通牦牛心脏、肝脏、肺脏、脾脏、肾脏以及肌肉组织总RNA,利用RT-qPCR技术检测RPLP1基因在不同组织中的相对表达情况。RPLP1基因开放阅读框长度为345 bp,编码114个氨基酸,理论相对分子质量为28.4 kD,等电点pI值为5.75,RPLP1蛋白的理化性质稳定,整条肽链呈疏水性,无信号肽,无跨膜区,主要在核糖体中发挥作用,该蛋白质二级结构主要由α螺旋(51.75%)、延伸链(9.65%)、无规卷曲(35.09%)组成;同源性比对结果显示,牦牛与普通牛亲缘关系最近;RT-qPCR结果显示,RPLP1基因在牦牛的7个组织中都参与表达,其在肌肉组织中的相对表达极显著高于其他组织(P<0.01)。本研究为后期牦牛RPLP1基因的功能研究奠定了基础。

     

    Abstract: To study the genetic characteristics of yak acid ribosomal protein(P1) and its expression in various tissues, the yak RPLP1 gene was amplified by gene cloning and RT-PCR and the full-length sequence was obtained and analyzed by biological software. The total RNA of heart, liver, lung, spleen, kidney and muscle tissues of Datong yak in Qinghai was extracted. The relative expression of RPLP1 gene in different tissues was detected by RT-qPCR. The open reading frame of RPLP1 gene was 345 bp in length and encoded 114 amino acids. The theoretical relative molecular mass was 2.4 kD, and the isoelectric point pI value was about 5.75. The physicochemic alproperties of RPLP1 protein were stable and the whole peptide chain was hydrophobic. No signal peptide, no transmembrane region, mainly plays a role in ribosomes. The secondary structure of this protein is mainly composed of α helix(51.75%), extended chain(9.65%), random coil(35.09%); homology comparison results showed that the yak had the closest relationship with the common cattle; RT-PCR results showed that the RPLP1 gene was expressed in different degrees in seven tissues. The relative expression in muscle tissue was significantly higher than that in other tissues(P<0.01). This study laid a foundation for the functional study of the subsequent yak RPLP1 gene.

     

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