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人TAGLN基因及基因启动子的生物信息学分析

Bioinformatic Analysis of Human TAGLN Gene and Promotor

  • 摘要: 人TAGLN基因编码的蛋白参与细胞骨架重构,在肿瘤细胞的增殖、迁移、侵袭和转移等生物学过程发挥重要作用。为探究TAGLN基因的启动子区、CpG岛、转录因子结合位点、翻译后修饰位点、亚细胞定位及B细胞线性表位,利用多种生物信息学方法在线分析TAGLN基因5′端的启动子、CpG岛、转录因子结合位点、翻译后修饰位点和亚细胞定位及B细胞线性表位。结果表明,Promoter 2.0未显示明显的启动子序列;其余3种软件显示人TAGLN基因5′调控区2 000 bp含启动子序列,但核心启动子区不同且对应不同的转录本;4种软件均未发现CpG岛,但均显示有一处CpG集中分布区域;AliBaba2.1和PROMO数据库预测与TAGLN基因启动子区的共同转录因子结合位点17个;JASPAR获得6个与转录方向一致(正链)的转录因子;SwissRegulon显示第1个启动子结合的转录因子JUNB、SMAD4、SMAD1和SMAD3与转录方向一致;人TAGLN基因编码的蛋白主要定位于细胞质和细胞核,可被磷酸化、乙酰化、泛素化和甲基化等翻译后修饰调控,有9个B细胞线性表位(抗原表位)热点片段。生物信息学软件能预测人TAGLN基因的启动子区、CpG岛、转录因子结合位点、翻译后修饰位点、亚细胞定位及B细胞线性表位,可以高效地获得TAGLN基因的相关信息,为深入研究该基因对乳腺癌的影响及作用机制和抗体开发等提供理论依据。

     

    Abstract: The encoding protein of human TAGLN gene is involved in cytoskeleton remodeling and plays an important role in the biological processes of tumor cell proliferation, migration, invasion and metastasis. In order to explore the promoter region, CpG island, transcription factor binding site, post-translational modification site, subcellular localization and B-cell linear epitope of TAGLN gene, the promoter region, CpG island and transcription factor binding sites, post-translational modification sites, subcellular localization and B cell linear epitopes of TAGLN gene were analyzed online by various bioinformatics methods. The results showed that no obvious promoter region was showed by Promoter 2.0;The 2 000 bp region of human TAGLN gene 5′ regulatory region contained promoter sequence with the other three softwares, but the core promoter regions were different of human TAGLN gene corresponding to different transcripts. No CpG island of human TAGLN gene 5′ regulatory region was showed by the four online softwares, but a CpG concentrated distribution region was showed, respectively. Seventeen transcription factor binding sites in common with the promoter region of TAGLN gene were showed in the database of Alibaba 2.1 and PROMO software; Six transcription factors with the same transcription direction(positive chain) were obtained by JASPAR software; The transcription factors JUNB, SMAD4, SMAD1 and SAMD3 were showed in the first promoter bind to the promoter region and were consistent with the transcription direction by Swissregulon; The protein encoded by human TAGLN gene can be modified by phosphorylation, acetylation, ubiquitination and methylation; It is mainly located in cytoplasm and nucleus; there are nine hot spots of B cell linear epitope(antigen epitope). The promoter region, CpG island, transcription factor binding site, post-translational modification site, subcellular localization and B-cell linear epitope of human TAGLN gene were predicted by bioinformatics methods, the relevant information of the gene can be efficiently obtained, which will provide a theoretical basis for further study of the function, mechanism and antibody development of human TAGLN gene in breast cancer.

     

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