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纳米孔基因测序技术在DNA甲基化修饰检测中的应用研究进展

Advances in Application of Nanopore Sequencing Technology in DNA Methylation Detection

  • 摘要: DNA甲基化是最常见的表观遗传修饰类型之一,其中哺乳动物基因组中最常见的5-甲基胞嘧啶(5-methylcytosine, 5mC)甲基化修饰参与了许多重要的生命活动,其含量的异常与疾病,尤其是癌症的发生发展密切相关。当前检测5mC修饰最常用的方法是基于亚硫酸氢盐转化的第二代基因测序技术,该方法虽然转化效率高且测定准确,但仍然存在不足之处,包括DNA分子降解、处理过程繁杂、测序读长较短、检测特异性不高等。近些年发展起来的纳米孔基因测序技术凭借其能对DNA修饰直接进行检测,且具有读长长、通量高、速度快等特点,在DNA表观遗传修饰检测方面展现了良好优势。本文对DNA的5mC修饰的形成及其经典的检测方法进行了简要介绍,并重点介绍了纳米孔基因测序技术在DNA的5mC修饰检测中的应用研究进展。

     

    Abstract: DNA methylation is one of the most common types of epigenetic modification, among which 5-methyl-cytosine(5 mC), the most common methylated modification in mammalian genome, is involved in many important life activities. Abnormal alterations in the content of 5 mC are closely related to the occurrence and deve-lopment of diseases, especially cancer. Although the most common method used to detect 5 mC methylation is based on bisulfite-converted next-generation sequencing, there are still some drawbacks, including degradation of DNA molecules, complicated processing, short-reading length, low specificity and so on. In recent years, nanopore sequencing has been developed in the detection of DNA modification due to its ability to directly detect DNA modifications and the advantages of long-reading length, high throughput and speed. This review will briefly introduce the formation of 5 mC modification in DNA and its classical detection methods, and mainly focus on the application of nanopore sequencing technology in the detection of DNA 5 mC modification.

     

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