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Bta-miR-19b在LPS诱导的奶牛(Bos taurus)乳腺上皮细胞中的表达及其生物信息学分析

Expression of Bta-miR-19b in LPS-induced Bovine (Bos taurus) Mammary Epithelial Cells and its Bioinformatics Analysis

  • 摘要: 为了分析奶牛(Bos taurus) miR-19b (Bta-miR-19b)在乳腺上皮细胞炎症反应中的表达及潜在调节机制,本研究利用实时荧光定量PCR (real-time quantitative PCR, RT-qPCR)检测了Bta-miR-19b在脂多糖(lipopolysaccharide, LPS)诱导奶牛乳腺上皮细胞第0、3、6、12、24 h的表达水平,并采用生物信息技术对Bta-miR-19b进行了功能分析。结果表明,与对照组0h相比,Bta-miR-19b在LPS诱导后第3、6、12、24 h的表达水平均极显著下调(P<0.01),且在12 h的表达水平最低。生物信息学分析发现Bta-miR-19b的成熟体序列在多种哺乳动物间高度保守;Bta-miR-19b的85个候选靶基因显著富集在内皮细胞凋亡过程和子宫内胚胎发育等生物学过程,并参与FoxO信号通路、mTOR信号通路和PI3K-AKT等信号通路(P<0.05);蛋白质互作网络分析显示,磷脂酰肌醇-4,5-二磷酸3-激酶催化亚基α(phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha,PIK3CA)基因与磷酸酶和张力蛋白同源物(phosphatase and tensin homolog,PTEN)基因是Bta-miR-19b的核心候选靶基因。结果提示,Bta-miR-19b可能通过PIK3CA和PTEN基因介导的PI3K/AKT/NF-κB或PI3K/AKT/mTOR信号传导途径调控LPS诱导的奶牛乳腺上皮细胞炎症反应,可为奶牛乳腺炎的分子调节机制解析奠定基础。

     

    Abstract: To analyze the expression of bovine(Bos taurus) miR-19b(Bta-miR-19b) in inflammatory response of mammary epithelial cells and its potential regulation mechanism, the expression level of Bta-miR-19b was detected by real-time quantitative PCR(RT-qPCR) at 0, 3, 6, 12, 24 h after lipopolysaccharide(LPS) induced bovine mammary epithelial cells, and the function of Bta-miR-19b was analyzed by bioinformatics in this study. Compared with control group 0 h, the expression level of Bta-miR-19b was significantly down-regulated at 3, 6, 12, 24 h after LPS induction(P<0.01), and the expression level at 12 h was the lowest. Bioinformatics analysis showed that the mature sequence of Bta-miR-19b was highly conserved among various mammals. The 85 candidate target genes of Bta-miR-19b were significantly enriched in the biological processes such as endothelial cell apoptosis and intrauterine embryo development, as well as participated in FoxO signaling pathway, mTOR signaling pathway and PI3K-AKT signaling pathway(P<0.05). Protein-protein interaction network analysis showed that phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha(PIK3CA) and phosphatase and tensin homolog(PTEN) were the hub candidate target genes of Bta-miR-19b. The results suggest that Bta-miR-19b may regulate LPS-induced inflammation in bovine mammary epithelial cells through PI3K/AKT/NF-κB or PI3K/AKT/mTOR signaling pathway by PIK3CA and PTEN genes, which would provide a basis for the analysis of the molecular regulatory mechanism of dairy cow mastitis.

     

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