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胞外酸中毒对未成熟树突状细胞蛋白质组学的影响

Effect of Extracellular Acidosis on Immature Dendritic Cells Using Proteomic Analysis

  • 摘要: 研究胞外酸中毒对未成熟树突状细胞(immature dendritic cells, imDCs)蛋白质组表达水平的影响,能够为深入研究酸性病理微环境调控imDCs免疫功能的分子机制奠定前期基础。体外诱导小鼠骨髓细胞分化为imDCs, pH6.5酸性条件处理imDCs 24 h,然后使用Label-free定量技术筛选出差异表达蛋白,结果显示,pH6.5处理使imDCs的389个蛋白表达发生显著变化。GO分析差异表达蛋白参与的细胞组分、分子功能及生物过程,KEGG分析差异表达蛋白涉及的信号通路,结果显示,这些差异表达蛋白参与核糖体形成、影响离子跨膜转运、细胞呼吸调节等过程,涉及的信号通路包括亨廷顿病信号通路、核苷酸结合寡聚化结构域(nucleotide-binding oligomerization domain, NOD)样受体信号通路以及环腺苷一磷酸(cyclic adenosine monophosphatec, cAMP)信号通路等。利用Cytoscape软件展示差异表达蛋白之间的互作网络图,并按照节点数筛选关键蛋白,筛选出下调关键差异表达蛋白核糖体蛋白(ribosomal protein, RP) S27A、核糖体蛋白S23(RPS23)、核糖体蛋白L21(RPL21)和CREB结合蛋白(CREB-binding protein, CREBBP)以及上调关键差异表达蛋白淀粉样前体蛋白(amyloid precursor protein, APP)和可溶性N-乙基马来酰亚胺敏感因子附着蛋白受体同源蛋白(soluble N-ethylmaleimide-sensitive factor attachment protein receptors homolog, YKT6)等。

     

    Abstract: The effect of extracellular acidosis on proteome of immature dendritic cells(imDCs) was investigated in this study, so as to lay a preliminary foundation for further study on the molecular mechanism of imDCs function regulated by acidic pathological microenvironment. Mouse bone marrow cells were induced to differentiate into imDCs, then the proteome of imDCs was investigated using Label-free quantification after treatment with pH6.5 for 24 h. The result revealed that expression of 389 proteins changed significantly after pH6.5 treatment. GO was used to analyze the cell composition, molecular function and biological processes involved in differentially expressed proteins, and KEGG was used to analyze the relevant signal pathways involved in differentially expressed proteins. The results revealed that differentially expressed proteins were involved in ribosomes, ion transmembrane transport, cellular respiratory regulation, Huntington′s disease signaling pathway, nucleotide-binding oligomerization domain(NOD) like receptor signaling pathway and cyclic adenosine monophosphatec(cAMP) signaling pathway, etc. The interaction network of differentially expressed proteins was presented by Cytoscape software, and then key proteins were selected according to the number of nodes. The results showed that the key differentially expressed proteins, including ribosomal protein S27 A, S23, L21 and CREB-binding protein(CREBBP), were down-regulated, amyloid precursor protein(APP) and soluble N-ethylmaleimide-sensitive factor attachment protein receptors homolog(YKT6) were up-regulated.

     

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