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藏羊BMPR-ⅠB基因表达、序列特征和多态性及其对产羔性状的影响

Expression, Sequence Characteristics and Polymorphism of BMPR-ⅠB Gene in Tibetan Sheep and Their Effects on Lambing Traits

  • 摘要: 为探究藏羊(Ovis aries)BMPR-ⅠB基因的序列特征、表达特征及其多态性对产羔性状的影响,本研究利用RT-qPCR、克隆测序、生物信息学方法和iMLDR技术等检测藏羊BMPR-ⅠB基因的组织表达特性,克隆了藏羊BMPR-ⅠB基因的编码区,分析了BMPR-ⅠB理化性质和蛋白质结构,并检测了其在臧羊群体中的多态性。RT-qPCR结果表明,BMPR-ⅠB基因在下丘脑、垂体、心脏、肝脏、脾脏、肺脏、肾脏、卵巢、输卵管、子宫、瘤胃、十二指肠、臂三头肌、半腱肌、股四头肌和背最长肌等16个组织中均有表达,其中在卵巢、输卵管和子宫中的表达量高于其他组织的,在肌肉组织中的表达量最低。生物信息学分析结果表明,藏羊BMPR-ⅠB基因包含1个长为1 509 bp的开放阅读框,编码502个氨基酸,其编码区氨基酸序列与绵羊的关系最近;BMPR-ⅠB蛋白的分子式为C2511H3986N694O747S33,分子量为56 907.45 Da,总原子数为7 971,理论等电点为7.78,T1/2为30 h,不稳定指数为54.07,亲水性均值(grand average of hydropa-thicity, GRAVY)为-0.357; BMPR-ⅠB蛋白含信号肽,1个跨膜区,属于跨膜蛋白;存在87个潜在的磷酸化位点、2个N-糖基化修饰位点;α-螺旋、延伸链、β-转角和无规卷曲所占的比例分别为34.86%、13.15%、3.39%和48.61%,属于混合性蛋白。基因分型结果表明,藏羊BMPR-ⅠB基因编码区FecB位点存在A>G突变,且存在3种基因型,分别为野生++型、杂合突变B+型和纯合突变BB型,多态信息含量为0.07,属于低度多态,且该位点处于Hardy-Weinberg平衡状态。藏羊平均产羔数在野生++型和杂合突变+型之间差异显著(P<0.05)。本研究结果为进一步研究BMPR-ⅠB基因对藏羊繁殖性能的调控作用提供参考数据。

     

    Abstract: In order to explore the sequence characteristics, expression characteristics and polymorphism of BMPR-ⅠB gene in Tibetan sheep(Ovis aries)on lambing traits, RT-qPCR, clone sequencing, bioinformatics and iMLDR technology were used to detect the tissue expression characteristics of Tibetan sheep BMPR-ⅠB gene, to clone the coding region of Tibetan sheep BMPR-ⅠB gene, to analyze the physicochemical properties and protein structure of BMPR-ⅠB, and to detect polymorphism in Tibetan sheep groups. RT-qPCR results showed that BMPR-ⅠB gene was expressed in 16 tissues including hypothalamus, pituitary, heart, liver, spleen, lung, kidney, ovary, oviduct, uterus, rumen, duodenum, brachial triceps, semitendinosus, quadriceps femoris and longissimus dorsi muscle. The expression level in ovary, oviduct and uterus was higher than the other tissues, and the expression level in muscle tissue was the lowest. Bioinformatics analysis showed that BMPR-ⅠB gene of Tibetan sheep contained an open reading frame with a length of 1 509 bp, encoding 502 amino acids, and the amino acid sequence of the coding region was closest to sheep. The mole-cular formula of BMPR-ⅠB protein was C2511H3986N694O747S33, the molecular weight was 56 907.45 Da, the total atomic number was 7 971, the theoretical isoelectric point was 7.78, the T1/2 was 30 h, and the instability index is 54.07. Grand average of hydropathicity(GRAVY)was-0.357; BMPR-ⅠB protein contained signal peptide and one transmembrane region, belonging to transmembrane protein. There were 87 potential phosphorylation sites and 2 N-glycosylation modification sites. The percentage of α-helices,elongation chains, β-turns and random curls were 34.86%, 13.5%, 3.39% and 48.61% respectively.There was A>G mutation at the FecB site in the coding region of BMPR-ⅠB gene of Tibetan sheep, and there were three genotypes as follows: wild ++ type, heterozygous mutation B+ type and homozygous mutation BB type. The polymorphism information content was 0.07, belonging to low polymorphism, and the locus was in Hardy-Weinberg equilibrium state. The average number of lambs produced by Tibetan sheep differed significantly between genotype ++ and B+(P<0.05). The results of this experiment provide reference data for further study on the regulation of BMPR-ⅠB gene on the reproductive performance of Tibetan sheep.

     

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