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荷花(Nelumbo nucifera)全基因组PRR基因家族鉴定及其在多种非生物胁迫下的表达模式

Genome-wide Identification and Expression Pattern of PRR Gene Family in Nelumbo nucifera Under Various Abiotic Stresses

  • 摘要: 为了探究荷花(Nelumbo nucifera)伪应答调控蛋白(pseudo-response regulators, PRR)NnPRR家族成员的特征及其在非生物胁迫响应中的作用,通过生物信息学分析,将7个NnPRR基因从荷花全基因组中挖掘出来,对其基因结构、蛋白保守基序、顺式作用元件及共线性关系等进行了鉴定分析,并利用实时定量PCR技术探究各基因分别在外源施加300 mmol/L NaCl、 5 mmol/L水杨酸(salicylic acid, SA)及4℃低温处理下的表达模式。研究结果表明,该家族基因在荷花中可分为3个分支,集中分布在chr2、chr3、chr5和chr6染色体上,该家族蛋白均定位于细胞核。该家族基因在启动子区域发现大量光响应元件,且一些基因还具有低温、茉莉酸甲酯及脱落酸等响应元件。从基因的表达模式上看,NnPRR基因家族7个基因均正向响应外源NaCl处理,而NnPRR2、NnPRR4、NnPRR3等基因则特异性响应外源SA或低温胁迫,推测该家族基因特异性参与荷花非生物逆境胁迫。本研究结果为深入研究荷花PRR基因家族响应逆境胁迫提供了理论基础,也为抗逆新品种的选育提供了新的基因资源。

     

    Abstract: To investigate the characteristics of NnPRR family of pseudo-response regulators(PRR) in lotus(Nelumbo nucifera) and their role in abiotic stress response, seven NnPRR genes were identified from the whole genome of N. nucifera by bioinformatics analysis, and their gene structure, protein conserved motif, cis-acting element and collinear relationship were identified and analyzed. The expression patterns of each gene under treatments of the exogenous 300 mmol/L NaCl, 5 mmol/L salicylic acid(SA) and low temperature at 4 ℃ were explored by real time quantitative PCR. The results showed that this family genes could be divided into three branches, which were concentrated on chromosomes chr2,chr3,chr5 and chr6, and the proteins of this family were all located in the nu-cleus. Great numbers of light response elements has been found in their promoter regions, and some of the genes also contain the specific response elements such as low temperature, methyl jasmonate and abscisic acid, ect. From the gene expression pattern, seven genes in NnPRR gene family were positively responsive to exogenous NaCl treatment, while NnPRR2, NnPRR4 and NnPRR3 genes specifically responded to exogenous SA or low temperature stress, suggesting that this family genes were specifically involved in abiotic stress in N. nucifera. The results of this study not only provide a theoretical basis for in-depth study of the response to stress of N. nucifera PRR gene family, but also provide new gene resources for the breeding of new stress-resistant varieties.

     

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