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烟碱降解菌株LN-1的分类鉴定及全基因组分析

Identification and Whole Genome Analysis of Strain LN-1 with the Ability to Degrade Nicotine

  • 摘要: 菌株LN-1是从长期植烟土壤中分离出的一株能够高效降解烟碱的菌株。为了进一步阐明该菌株的降解机制,本研究对其进行了全基因组序列的测定,获得了菌株LN-1的全基因组序列。通过基于16S rRNA基因序列的系统发育分析以及平均核苷酸一致性分析,将菌株LN-1鉴定为放射性农杆菌(Agrobacterium radiobacter),确定了菌株LN-1的分类地位。通过基因组分析发现,菌株LN-1参与烟碱降解代谢的基因簇定位于染色体2上。同时,LN-1的染色体2上还含有降解对羟基苯甲酸的基因簇,该基因簇包含了与已知对羟基苯甲酸降解基因(pcaG、pcaH、pcaC、pcaQ、pobA、pcaR、pcaI、pcaJ、pcaF、pcaB、pcaD、pobR)相似的基因,本研究基于此还验证了菌株LN-1降解对羟基苯甲酸的能力。菌株LN-1同时具有降解烟碱和对羟基苯甲酸的能力,在改善植烟土壤微生态结构和缓解长期植烟造成的连作障碍方面有潜在价值。

     

    Abstract: Strain LN-1 is isolated from long-term tobacco planting soil, which can degrade nicotine efficiently. In order to further clarify the nicotine degradation mechanism of strain LN-1, strain LN-1 was subjected to whole genome sequencing in this study. The whole genome sequence of strain LN-1 was obtained. The taxonomic position of strain LN-1 was determined by phylogenetic analysis based on 16S rRNA gene sequence and average nucleotide identity analysis. The strain LN-1 was identifiled as Agrobacterium radiobacter. Through genome analysis, it was found that the gene cluster involved in nicotine degradation was located on the chromosome 2 of strain LN-1. Meanwhile, chromosome 2 of LN-1 also harbored a p-hydroxybenzoic acid degradation gene cluster, which contained genes similar to the known p-hydroxybenzoic acid degradation genes(pcaG, pcaH, pcaC, pcaQ, pobA, pcaR, pcaI, pcaJ, pcaF, pcaB, pcaD, pobR). Therefore, this study also verified the ability of strain LN-1 to degrade p-hydroxybenzoic acid. Strain LN-1 has the ability to degrade both nicotine and p-hydroxybenzoic acid, which has the potential value in improving microecological structure of tobacco planting soil and alleviating continuous cropping obstacles of long-term tobacco planting.

     

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