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肺腺癌转移相关的免疫特征开发及潜在中药预测

Development of Immune-related Signature Related to Lung Adenocarcinoma Metastasis and Potential Herbal Medicine Prediction

  • 摘要: 本研究旨在确定具有免疫相关基因的可靠预后特征,该特征可以预测预后并对肺腺癌(lung adenocarcinoma, LUAD)患者的个体化管理提供帮助。从癌症基因组图谱(The Cancer Genome Atlas, TCGA)数据库下载LUAD患者的mRNA表达谱和相应的临床数据;使用单因素COX和LASSO模型来构建预后模型;使用基于风险评分的方法开发预后特征;通过Kaplan-Meier分析比较高风险患者和低风险患者之间的总生存期(overall survival, OS), OS的独立预测因子通过单变量和多变量COX分析确定;单样本基因集富集分析(single sample gene set enrichment analysis, ssGSEA)用于评估免疫细胞浸润程度;通过LASSO和COX回归分析构建生存预后特征。根据预后特征,在OS方面将患者显著分层为高风险组和低风险组,与低风险组相比,高风险组的LUAD患者OS显著降低。通过ROC曲线分析证实了预后基因标记的预测能力。多因素COX分析显示,风险评分是OS的独立预测因子。通过免疫分析,发现了肺腺癌转移组与未转移组的不同的免疫特征。与Coremine Medical数据库相互映射筛选出牛黄(Bovis Calculus)、罗汉果(Siraitiae Fructus)等15种中药。本研究提出了一种新的肺腺癌预后特征,用于估计LUAD的OS。此外,本研究发现了肺腺癌转移组和未转移组之间的免疫特征差异,这可能有助于对LUAD患者进行更准确的生存风险分层和个体化临床管理。

     

    Abstract: The study aimed to identify reliable prognostic features with immune-related genes that could predict prognosis and aid in the individualized management of patients with LUAD. The mRNA expression profiles of LUAD patients and corresponding clinical data were downloaded from The Cancer Genome Atlas(TCGA) database. One-way COX and LASSO regression models were used to identify prognostic genes. Prognostic features were developed using a risk score-based approach. Overall survival(OS) was compared between high-and low-risk patients by Kaplan-Meier analysis. Independent predictors of OS were determined by univariate and multivariate COX analyses. Single sample gene set enrichment analysis(ssGSEA) was used to assess the degree of immune cell infiltration. Prognostic characteristics were constructed by LASSO and COX regression analysis. Prognostic characteristics significantly stratified patients into high-and low-risk groups in terms of OS, with significantly lower OS in LUAD patients in the high-risk group compared with the low-risk group. The predictive power of prognostic genetic markers was confirmed by ROC curve analysis. Multifactorial COX analysis showed that risk score was an independent predictor of OS. Immunological analysis revealed different immune profiles in the metastatic and non-metastatic groups of lung adenocarcinoma. Inter-mapping with the Coremine Medical database screened 15 herbal medicines such as Niuhuang(Bovis Calculus) and Luohanguo(Siraitia Fructus). Our study proposed a new prognostic profile of lung adenocarcinoma for estimating overall survival in LUAD. In addition, identified differences in immune profiles between the metastatic and non-metastatic groups of lung adenocarcinoma. This study may be useful for more accurate survival risk stratification and individualized clinical management for patients with LUAD.

     

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