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舞毒蛾Methuselah-like分子模拟及靶向小分子抑制剂研究

Molecular Simulation of Lymantria dispar Methuselah-like and Targeting Small Molecular Inhibitors

  • 摘要:
    目的 旨在通过虚拟筛选技术筛选Methuselah-like(Ldmthl1)蛋白潜在的小分子抑制剂,并通过分子动力学模拟、MM-PBSA及生物测定,探究潜在化合物对Ldmthl1蛋白的抑制能力,为针对舞毒蛾Ldmthl1研发新型靶向杀虫剂奠定理论基础。
    方法 以舞毒蛾为研究对象,构建Ldmthl1同源模型,虚拟筛选Ldmthl1受体小分子抑制剂,并采用分子动力学和MM-PBSA计算结合自由能分析6种潜在小分子抑制剂与Ldmthl1受体的结合强度;通过生物测定分析6种潜在小分子抑制剂的毒力,同时将6种潜在小分子抑制剂与溴氰菊酯进行联合使用,探究6种潜在化合物的增效作用。
    结果 Ldmthl1含7个跨膜结构,符合G蛋白偶联受体结构特点,评估后符合蛋白模型评估标准;分子对接获得20个候选化合物,根据结合方式及结合能确定6种小分子化合物为潜在的抑制剂;分子动力学模拟显示,6种潜在小分子抑制剂通过氢键和疏水作用力与Ldmthl1受体稳定结合;MM-PBSA计算结合自由能发现6种潜在小分子抑制剂与Ldmthl1受体结合紧密;致死浓度LC30溴氰菊酯与6种抑制剂按照1:1、1:2和2:1的比例联合使用饲喂舞毒蛾3龄幼虫,6种抑制剂与溴氰菊酯具有协同增效作用,且当混合比例为1:2时,增效作用最显著,但溴氰菊酯浓度过高时,导致抑制剂无增效作用。
    结论 虚拟筛选得到6种可与Ldmthl1受体稳定结合且具有杀虫活性潜在小分子抑制剂,与溴氰菊酯联用后呈现增效作用,本研究可为研发Ldmthl1靶向新型杀虫剂奠定理论基础。

     

    Abstract:
    Objective The aim is to screen potential small molecule inhibitors of methuselah-like (Ldmthl1) protein through virtual screening technology and explore the inhibitory ability of potential compounds on Ldmthl1 protein through molecular dynamics simulation, MM-PBSA, and bioassays. It lays a theoretical foundation for developing new insecticides targeting Lymantria dispar Ldmthl1.
    Method The homology model of Ldmthl1 receptor was constructed in Lymantria dispar for virtual screening the small molecule inhibitors of the Ldmthl1 receptor. The binding strength of 6 potential small molecule inhibitors to Ldmthl1 receptor was analyzed by using molecular dynamics and MM-PBSA; The toxicity of 6 potential small molecule inhibitors was analyzed by bioassay, and the synergistic effect of the six potential compounds was explored by combining them with deltamethrin.
    Result Ldmthl1 contained 7 transmembrane structures, which was consistent with the structural characteristics of G protein-coupled receptors, and met the evaluation criteria of protein models; 20 candidate compounds were obtained by molecular docking, and 6 small molecule compounds were identified as potential inhibitors based on the binding models and binding energies; Molecular dynamics simulations showed that 6 potential small molecule inhibitors were stably bound to Ldmthl1 receptors through hydrogen bonding and hydrophobic forces; The MM-PBSA calculation of binding free energy revealed that 6 potential small molecule inhibitors were tightly bound to the Ldmthl1 receptor; The lethal concentration of LC30 deltamethrin and 6 inhibitors were combined to feed the 3rd instars of Lymantria dispar larvae at the ratio of 1 : 1, 1 : 2 and 2 : 1. The combination of 6 inhibitors with deltamethrin showed synergistic effect, and the synergistic effect was most significant when the mixing ratio was 1 : 2. However, no synergistic effect was found when the concentration of deltamethrin was too high.
    Conclusion Six potential small molecule inhibitors with insecticidal activity that can stably bind to the Ldmthl1 receptor were obtained through virtual screening. They showed synergistic effects when combined with cypermethrin. This study can lay a theoretical foundation for the development of new insecticides targeting Ldmthl1.

     

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