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11条白桦BpSPL家族基因的生物信息学和表达分析

Bioinformatics and Expression Analysis of 11 BpSPLs in Betula platyphylla Suk.

  • 摘要: 目的 研究白桦中SPL转录因子的基因序列特征及其在不同时期不同组织中的表达规律。方法 依据白桦45个转录组测序结果,共获得12条全长SPL基因,依次命名为白桦BpSPL1-BpSPL12,对其中11条BpSPL进行了生物信息学及基因表达特征分析。结果 生物信息学分析发现,11条BpSPL均含有1个高度保守的SBP结构域,且基因长度差异较大,含有210个不等数目的外显子,系统进化分析发现11条白桦SPL分属于六大类SPL蛋白;qRT-PCR分析结果显示,白桦BpSPL基因在不同时期的叶、顶芽、茎、雄花序中表达变化显著,多数SPL基因在顶芽中7月5日和8月20日至9月20日时期表达较高,除BpSPL1基因外在雄花序从6月份到9月份的生长阶段中,SPL的表达水平呈现逐渐升高的总体趋势。结论 BpSPL基因可能参与到了白桦顶芽和雄花序的生长发育过程。

     

    Abstract: Objective To analyze the sequence features and gene expression rules in different tissues and periods of SPL transcription factor from Betula platyphylla Suk. Method Based on 45 transcriptome databases of Birch, 12 BpSPL genes were obtained and named as BpSPL1-BpSPL12, of which 11 genes were analyzed. Result Bioinformatics analysis showed that all the 11 BpSPLs contained a highly conserved SBP domain, their lengths exhibited a high diversity and owned 210 numbers of exon in genetic sequences. Phylogenetic analysis showed that the 11 Birch SPL proteins belonged to six major categories. The qRT-PCR results suggested that the expression levels of the 11 BpSPL genes changed significantly in different periods and different tissues (leaves, terminal buds, stems, male inflorescences). In terminal buds, most BpSPL genes were up-regulated on July 5 and August 20 to September 20. In male inflorescences, with the exception of BpSPL1 which was down-regulated or unchanged, all the other BpSPL genes exhibited a gradual increasing pattern from June to September (the growth stage). Conclusion This study suggested that these BpSPL genes may be involved in the growth and development of birch terminal buds and male inflorescences.

     

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