高级检索+

白桦BpLHY、BpTOC1与BpGI节律基因生物信息学及表达分析

Bioinformatics and Expression Analysis of Circadian Related Gene BpLHY、BpTOC1 and BpGI in Betula platyphylla Suk.

  • 摘要: 目的 探究白桦生物钟基因运行机制及在生长发育、胁迫应答中的作用。方法 运用生物信息学方法对白桦BpLHY、BpTOC1、BpGI节律基因进行分析,预测其编码蛋白的结构功能。利用RT-PCR方法检测白桦BpLHY、BpTOC1、BpGI基因昼夜表达模式,在非生物胁迫重金属Cd、低温(4℃)、与盐(NaCl)及信号诱导SA(水杨酸)、SNP(硝普钠)下的表达情况。结果 白桦BpLHY、BpTOC1、BpGI节律基因编码的均为疏水性非分泌型,具有跨膜能力的mixed蛋白。白桦BpTOC1、BpLHY基因表达量均呈现白天低夜晚高的昼夜变化模式,而BpGI表达量则表现出白天高夜晚低的模式。在重金属Cd、低温(4℃)、与盐(NaCl)非生物胁迫下,BpLHY、BpTOC1与BpGI均上调表达。SA、SNP诱导白桦BpLHY与BpTOC1表达下调,而诱导BpGI表达上调。结论 白桦BpLHY、BpTOC1、BpGI节律基因昼夜表达模式及非生物胁迫、信号诱导下的表达特征为进一步研究白桦生物钟基因作用机制及其在植物生长发育和胁迫应答中的作用奠定了基础。

     

    Abstract: Objective To clarify the mechanism and functions in regulating plant growth and stress response of circadian clock genes in Betula platyphylla Suk. Method The sequences of BpLHY, BpTOC1 and BpGI were analyzed, and the structure and functions of coding proteins were predicted by bioinformatics method. The expression levels of BpLHY, BpTOC1 and BpGI were quantified using qRT-PCR. Result BpLHY, BpTOC1 and BpGI genes in B. platyphylla were 2 283bp, 1 623bp, and 3 507bp, encoding 760, 540, and 1 168 amino acids, respectively. The proteins encoded by these genes were hydrophobic, non-secreted transmembrane protein.BpTOC1 and BpLHY transcript levels were low during the daytime, but high at night. In contrast, BpGI expression was low during the daytime, and high at night and its highest expression levels increased by 29.28 times at 9:00 am. The expressions of BpLHY, BpTOC1 and BpGI increased by 105% to 2 390% in the abiotic stress of heavy metal cadmium, low temperature (4℃), salt (NaCl); SA and SNP induced the transcription levels of BpLHY, BpTOC1 genes reducing by 70.1% to 97.75% while the expression of BpGI increasing by 150% to 280%. Conclusion This study may provide some references for further study of BpLHY, BpTOC1 and BpGI function in regulation of plant growth and stress response and the mechanism of circadian clock in B. platyphylla.

     

/

返回文章
返回