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铁皮石斛叶绿体基因组特征与系统发育分析

Comparative and Phylogeny Analysis of Dendrobium candidum Complete Chloroplast Genomes

  • 摘要: 采用Illumina Hiseq平台高通量测序,对药用植物铁皮石斛进行叶绿体全基因组序列测序、注释、组装及结构分析,从NCBI中下载已发表的13个兰科植物以及2个外类群进行系统发育分析。结果表明,全基因组大小为153 508 bp,大单拷贝区域为85 759 bp,小单拷贝区域为14 973 bp,两个反向重复区域为26 419 bp;共注释133个基因,93个蛋白编码基因,32个转运RNA基因以及8个核糖体rRNA基因,GC的含量占总碱基数量的37.51%;共检测到47个长重复序列,63个简单重复序列;系统发育结果与石斛亲缘性最近。

     

    Abstract: In this study, high-throughput sequencing on the Illumina Hiseq platform was used to sequence, annotate, assemble and analyze the chloroplast whole genome of the medicinal plant Dendrobium candidum, and download 13 published orchid plants and 2 outgroups from NCBI for phylogenetic analysis. The results showed that the whole genome size was 153 508 bp, the large single copy region was 85 759 bp, the small single copy region was 14 973 bp, and the two inverted repeat regions were 26 419 bp; a total of 133 genes, 93 protein-coding genes, and 32 transfer RNA genes were annotated and 8 ribosomal rRNA genes, the content of GC accounted for 37.51% of the total number of bases; a total of 47 long repeats and 63 simple repeats were detected; the phylogenetic results were closest to Dendrobium nobile.

     

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