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豹皮樟纤维素合酶基因家族的鉴定与表达分析

Identification and Expression Analysis of Cellulose Synthase Gene Family in Litsea coreana var. sinensis

  • 摘要: 纤维素合酶基因在初生细胞壁和次生细胞壁的合成中发挥着不同的作用,影响着豹皮樟纤维素含量以及老鹰茶的品质。本试验应用生物信息学方法,从豹皮樟中鉴定出17个纤维素合酶(CesA)基因,根据系统进化关系将这些基因分为7个亚组,进行了基因结构、染色体定位和不同部位基因表达分析。结果表明,所有基因均具有纤维素结构域,且不均等地分布在染色体上;RNA-seq数据分析表明,LcoCesA1_1/3_2/3_5/3_1/3_3/2_2在各个组织中表达较为显著,在根、茎以及其他部位中相对表达量普遍最高的是LcoCesA3_1,推测其在纤维素合成中发挥着重要作用。研究表明,该家族蛋白相对分子量为18 834.17~128 366 kD之间;理论等电点(pI)介于5.07~8.74之间,一半以上的LcoCesA蛋白富含酸性氨基酸。

     

    Abstract: The cellulose synthase gene plays different roles in the synthesis of primary and secondary cell walls, affecting the cellulose content and quality of Litsea coreana var. sinensis. Using bioinformatics methods, 17 CesAs were identified from Litsea coreana var. sinensis, and these genes were divided into 7 groups according to their phylogenetic relationship. Gene structure, chromosome localization, and gene expression analysis were conducted in different parts. The results showed that all genes had cellulose syn domains and were unevenly distributed on chromosomes; RNA-seq data analysis showed that LcoCesA1_1/3_2/3_5/3_1/3_3/2_2 was more prominently expressed in various tissues. LcoCesA3_1 had the highest relative expression in roots, stems and other parts, which was speculated to play an important role in cellulose synthesis. The study showed that the relative molecular weight of this family protein was from 18 834.17 kD to 128 366 kD; The theoretical isoelectric point(pI) was from 5.07 to 8.74, and more than half of the LcoCesA protein was rich in acidic amino acids.

     

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