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辣椒MIKC型MADS-box基因家族鉴定及胁迫响应

Identification of MIKC MADS-box Gene Family of Capsicum annuum L.and Its Response to Abiotic Stress

  • 摘要: MADS-box家族在花的诱导和发育中作用广泛,有些基因在明显不相关的发育阶段具有多种功能。本研究通过生物信息学对辣椒MIKC型MADS-box家族系统发育树、保守结构、基因特征、GO和KEGG富集分析、时空表达等进行系统分析。在辣椒中共鉴定到25条MIKC_MADS基因,均具有MIKC_MADS的N端SRF-TF和C端K-box保守结构域,氨基酸数为122~278 aa,为两性亲水性蛋白。Motif分析发现,25条CaMADS-box基因均含有Motif1、Motif2、Motif4共3个保守基序。染色体定位发现,25条基因不均匀地分布在12条染色体上,其中染色体Chr02定位基因最多,共计5条基因。共线性分析发现MIKC_MADS在野生种Chiltepin中存在多个共线性区块。GO富集分析发现,MIKC_MADS主要参与植物生长初期发育过程,主要是花器官、胚乳发育过程,KEGG富集到甘氨酸、丝氨酸和苏氨酸代谢(ko00260),乙醛酸盐和二羧酸盐代谢(ko00630),碳代谢(ko01200)。顺式作用元件发现,与光响应元件、水杨酸、胚乳等元件相关。在时空表达过程中,MIKC_MADS在茎、叶、芽和花过程表达呈现上调表达趋势。

     

    Abstract: MADS-box genes play a wide range of roles in flower induction and development, with some genes having multiple functions at apparently unrelated developmental stages. In this study, the phylogenetic tree, conserved structure, gene characteristics, GO and KEGG enrichment analysis, and temporal and spatial expression of MIKC MADS-box gene family in Capsicum annuum L. were systematically analyzed through bioinformatics. A total of 25 MIKC_MADS genes were identified in Capsicum annuum L., all of which had the N-terminal SRF-TF and C-terminal K-box conserved domain of MIKC_MADS, with amino acid numbers ranging from 122 aa to 278 aa, and were amphoteric and hydrophilic proteins. Motif analysis showed that all 25 CaMADS-box genes contained three conserved Motif1, Motif2, and Motif4.Chromosome localization found that 25 genes were unevenly distributed on 12 chromosomes, among which chromosome Chr02 localization genes were the most, with a total of 5 genes. Collinearity analysis showed that there were multiple collinearity blocks of CaMADS-box genes in wild Chiltepin. GO enrichment analysis showed that MIKC_MADS was mainly involved in the early development process of plant growth, mainly in the development of flower organs and endosperm, and KEGG was enriched to glycine, serine and threonine metabolism(ko00260), glyoxylate and dicarboxylate metabolism(ko00630), and carbon metabolism(ko01200).The cis-acting elements were found to be related to photoresponsive elements, salicylic acid, endosperm and other elements. The expression of CaMADS-box in stem, leaf, bud and flower was up-regulated. Through the systematic analysis of MIKC_MADMADS-BOX gene family characteristics of Capsicum annuum L., which provided reference for the study of plant growth and development in different stages of Capsicum annuum L. breeding, and provides theoretical support for Capsicum annuum L. field breeding.

     

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