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基于全基因组关联分析挖掘甘蓝型油菜油酸含量QTL与SNP分子标记

Exploration on QTL and SNP Molecular Markers for Oleic Acid Content in Brassica napus Based on Genome-wide Association Analysis

  • 摘要: 本研究以国内外收集的300份甘蓝型油菜种质为材料,在2个环境下种植,结合油酸含量的表型和基因型数据,利用EMMAX软件进行全基因组关联分析。结果表明,关联群体的油酸含量分布呈连续性双峰分布,受2个主效基因位点控制;GWAS分析检测到一个控制油酸含量性状的主效QTL位点,位于C03染色体的第53853975~57808820位碱基之间,贡献率为62.51%,与chrC03_53853975(A/G)、chrC03_57808820(C/T) SNP分子标记及峰值SNP分子标记chrC03_56392730(G/T)紧密连锁,对应碱基突变导致多态性。峰值SNP等位基因为TT时,该性状表型效应值为57.93%。本研究首次揭示一种甘蓝型油菜籽油酸含量性状的C03染色体主效QTL位点及其SNP分子标记,贡献率高,为该性状的高效改良与分子标记辅助选择提供了重要理论依据。

     

    Abstract: In this study, 300 Brassica napus germplasms collected from both domestic and international sources were planted in two environments. By integrating phenotypic and genotypic data of oleic acid content, genome-wide association analysis was conducted using EMMAX software. The results indicated that the distribution of oleic acid content in the associated populations presented a continuous bimodal pattern and was controlled by two major gene loci. GWAS analysis identified a dominant QTL locus regulating oleic acid content, situated between the 53853975 and 57808820 bases of chromosome C03, with a contribution rate of 62.51%. It was correlated with the SNP marker and peak values of chrC03_53853975(A/G) and chrC03_57808820(C/T), and the SNP molecular marker chrC03_56392730(G/T) was closely linked. The corresponding base mutation resulted in polymorphism. When the peak SNP allele was TT, the phenotypic effect value of this trait was 57.93%. This study disclosed for the first time the dominant QTL locus of the C03 chromosome and its SNP molecular marker for the oleic acid content trait of glycole-type rapeseed, with a high contribution rate, providing a crucial theoretical basis for the efficient improvement of this trait and marker-assisted selection.

     

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