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玉米穗部性状QTL定位与候选基因分析

QTL Mapping and Candidate Gene Analysis of Ear Traits in Maize

  • 摘要: 本研究以热带玉米骨干自交系T32和QR273为亲本构建的150份F2、F2∶3分离家系为材料,利用简化基因组测序技术(GBS)对F2单株的基因型鉴定,同时分别在甘肃张掖和贵州贵阳两环境条件下对F2∶3家系的穗长、穗粗、穗行数、行粒数和秃尖长等5个穗部相关性状进行表型评价,采用完备区间作图法进行QTL定位。结果表明,两个环境下共检测到46个穗部相关性状QTL,分布于10条染色体上,可分别解释表型变异范围为1.89%~17.18%,可解释穗部性状表型变异大于10%的QTL有6个。结合公共数据库,利用生物信息学分析策略,预测出6个控制穗部性状变异的候选基因(Zm00001d041072,Zm00001d053048,Zm00001d011355,Zm00001d041073,Zm00001d030086,Zm00001d030088),这些基因所编码的蛋白具有植物生长发育、激素合成、营养成分转运和其他许多生物学功能,可作为后续基因图位克隆和分子辅助育种的候选靶标。

     

    Abstract: In this study, 150 F2, F2∶3 offsprings crossed by using tropical maize inbred lines of T32 and QR273 as parents, were selected as materials, and genotypes of F2 individuals were done by using simplified genome sequencing(GBS) method. While five ear related traits of the ear length(cm), ear diameter(cm), ear row number(row), grain number per row(grain) and ear barren tip(cm) of F2∶3 families were evaluated under two environments of Zhangye, Gansu and Guiyang, Guizhou. QTL mapping was performed by using the complete interval mapping method. Results showed that, a total of 46 QTL associated with ear-related traits were identified under two environments, distributed on 10 Chl omosomes and explained 1.89%-17.18% of the phenotypic variation, respectively. Six QTL explaining more than 10% of the phenotypic variation of ear traits were identified in this paper. And six candidate genes controlling ear related traits were identified including Zm00001d041072, Zm00001d053048, Zm00001d011355, Zm00001d041073, Zm00001d030086 and Zm00001d030088, which encoded proteins involved in plant growth and development, hormone synthesis, nutrient transport and other biological functions, of which these candidate genes could be used as candidate targets for gene cloning and molecular assisted breeding in the future.

     

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