Abstract: As a new round of rural reform tasks deployed by the Party Central Committee, the reform of the rural collective property rights system plays a vital role in realizing rural revitalization and agricultural modernization. Based on the subjective perception data of 663 rural households in Changji Prefecture, Xinjiang, this article constructs a comprehensive performance evaluation index system for the reform of the rural collective property rights system, uses the entropy method and fuzzy evaluation model to measure the comprehensive performance of the reform, and uses the coupling coordination model to measure the coupling between the various dimensions of the reform coordination. The results show that the comprehensive performance evaluation results of the rural collective property rights system reform in Changji Prefecture, Xinjiang from the perspective of farmers’ perceptions are relatively satisfactory, to supporting reforms. The farmers’ evaluation of the main body reforms believes that the implementation of the policy is good, and it has played a better role in leading and leading; but the equity transfer, equity pledge loans and collective economic development in the supporting reforms have not played all the roles. Reforms are more prominent in terms of economic, social, and ecological effects, and there is no tendency to “partial science”. The degree of coupling and coordination among the five dimensions of comprehensive reform performance is at the primary level of coordination, and the interaction among the five dimensions is poor. In addition, the four aspects of establishing a legal protection system, optimizing the equity transfer system, improving the property rights transaction mechanism, and strengthening the village-level collective economy provide policy inspiration for the further deepening of the rural collective property rights system reform in the arid area provinces.